YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42568843
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.93
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	203	0.97
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	230	0.88
Transmembrane Helix	231	253	0.89
Non-Cytoplasmic	254	260	0.85
Transmembrane Helix	261	282	0.74
Cytoplasmic	283	284	0.68
Transmembrane Helix	285	318	0.63
Non-Cytoplasmic	319	340	0.84
Transmembrane Helix	341	362	0.87
Cytoplasmic	363	382	0.86
Transmembrane Helix	383	400	0.97
Non-Cytoplasmic	401	419	0.83
Transmembrane Helix	420	440	0.94
Cytoplasmic	441	496	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLGKLIQLS ALLCPFLLSL HFRIAGASAH IYSSQPFHDV GNSLLLYGGS EGIFASSRSL  60
   61 IRFENITLWR TITGKGHRSN GLVQAVIFEA SDRNNIGGSA YGGQRSICCT PDLAKLQGCK 120
  121 QGEIIRIPSP HDPQWPILLP VRFKGKRSSA KMADTEILIT KTGIYNLLFI SCDPQLKGLK 180
  181 MTGKTVWKNP DGYLPGRMAP LVNFYVYMSL AYLLLSAVWF FQYLRFRMDI LPLQHCITAV 240
  241 ILLGLLEMLF WYLDYANFNH TGMRPLALTT WVVTIGALRK TVSRILILCV SMGFGVVKST 300
  301 LGGLTSKVLL VGVTYFIASE ILDIAEHVGI IDDMSGRSKL FLVLPDAFLD AFLILWIFTS 360
  361 LSKTLEQLQM KRTSVKLEIY RKFSNALAVM VVASVAWIVY EVYFKATDPF NERWQTAWTI 420
  421 TAFWDVIAFL LLCIICYLWT PSQNSQRYAY SGDVDEENEE AQSLTGGKQD GDISLVKQEK 480
  481 NAESDREEDV EEDKRE