YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2764509
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPDAKRLYDD LLSNYNRLIR PVTNNSETLT VHLGLKLSQL IEVNLKNQVM TTNVWVEQKW  60
   61 IDYKLRWNPE EYGGVEMLYV PSEHIWLPDI VLYNNADGNY EVTLMTKATL KYTGEVFWKP 120
  121 PAIYKSSCEI NVEYFPFDEQ SCTMKFGSWT YNGFQVDLKH MDQEAGSNLV SVGIDLSEFY 180
  181 LSVEWDILAV PATRNEEYYP CCVEPYSDIT FNITMRRKTL FYTVNLIIPC VGITFLTVLV 240
  241 FYLPSDSGEK VTLCISILLS LTVFFLLLAE IIPPTSLAVP LLGKYLLFTM ILVTLSISVT 300
  301 VFVLNVHFRS PSTHRMSPWV KRVFLHFMPR LLMMRRPPYS SRDCIDDTNF LDNGYSNDMD 360
  361 FRDSISDPYP PDVKGSPGFE SVAAAYKSAL NNHEDSCRQN QPHSSVTDSD NTLPRNLSPD 420
  421 ILSALEGVRF IAQHIKDADK DNEVIEDWKY VSMVLDRFFL WIFTLACIAG TCGIIFQAPS 480
  481 LYDKRIPIDQ QKSAISLRPS YYNIPFDLLH QKPIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	220	0.77
Transmembrane Helix	221	243	0.94
Cytoplasmic	244	250	0.73
Transmembrane Helix	251	272	0.91
Non-Cytoplasmic	273	284	0.65
Transmembrane Helix	285	308	0.90
Cytoplasmic	309	457	0.83
Transmembrane Helix	458	478	0.93
Non-Cytoplasmic	479	515	0.83