YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|455407
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKNEWEKIST QSVPSNIENN FEIEINTLDR FINKLYEIGR RDLIEALMTH FKKHLQNIMK  60
   61 PLLLPLFEQS NQNMWEQVRK VVIETTSQNL QELENGMINS LKMNKDDVEK KLNELQVYII 120
  121 DAVRSTILER PGFVSNLMEN KFISIFRLDD EGLPKKWKQN EDLSKPFFKA KEEAEKILDL 180
  181 FSYIRMDPKD DELSFISINP ATGKKMIIEE PENGTIDQTK VLFSLSERLS IYEGFQNMAE 240
  241 SNFIRAQQEL AAITVHSKTP MWLILLIAFL SFDNIVYVFK SPTFIALTLI IIGIIYSLNK 300
  301 IGYAYLIDSV ISYILSISWS SVLYLIQDLG LFKNLLPKPE APKRKRPQKK TQDDKPKPSI 360
  361 LLTHKKQPSV MGDVTMDNID SLNSFDDAFK LVSQDEKPIR KPLHPLPKRE TQSMKVMPMS 420
  421 ASFTKSQSMF IKRNPTTTSS LNKIKEANEF

Type	Start	End	Confidence
Cytoplasmic	1	261	0.52
Transmembrane Helix	262	296	0.75
Non-Cytoplasmic	297	303	0.29
Transmembrane Helix	304	331	0.67
Cytoplasmic	332	450	0.60