YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571237, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFAELVLS TSRCTCPCRS FTRKPLIRPP LSGLRLPGDT KPLFRSGLGR ISVSRRFLTA  60
   61 VARAESDQLG DDDHSKNVED KQKKASQLKK RVIFGIGIGL PVGCVVLAGG WVFTVALASS 120
  121 VFIGSREYFE LVRSRGIAKG MTPPPRYVSR VCSVICALMP ILTLYFGNID ILVTSAAFVV 180
  181 AIALLVQRGS PRFAQLSSTM FGLFYCGYLP SFWVKLRCGL AAPALNTGIG RTWPILLGGQ 240
  241 AHWTVGLVAT LISFSGVIAT DTFAFLGGKT FGRTPLTSIS PKKTWEGTIV GLVGCIAITI 300
  301 LLSKYLSWPQ SLFSSVAFGF LNFFGSVFGD LTESMIKRDA GVKDSGSLIP GHGGILDRVD 360
  361 SYIFTGALAY SFIKTSLKLY GV

Type	Start	End	Confidence
Cytoplasmic	1	91	0.97
Transmembrane Helix	92	115	0.92
Non-Cytoplasmic	116	163	0.88
Transmembrane Helix	164	186	0.86
Cytoplasmic	187	195	0.75
Transmembrane Helix	196	214	0.80
Non-Cytoplasmic	215	242	0.79
Transmembrane Helix	243	266	0.91
Cytoplasmic	267	283	0.93
Transmembrane Helix	284	303	0.92
Non-Cytoplasmic	304	311	0.65
Transmembrane Helix	312	331	0.84
Cytoplasmic	332	382	0.85