YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIPL3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	27	0.99
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	191	0.99
Transmembrane Helix	192	214	0.89
Cytoplasmic	215	248	0.96
Transmembrane Helix	249	272	0.88
Non-Cytoplasmic	273	278	0.74
Transmembrane Helix	279	299	0.94
Cytoplasmic	300	317	0.85
Transmembrane Helix	318	342	0.90
Non-Cytoplasmic	343	349	0.82
Transmembrane Helix	350	368	0.95
Cytoplasmic	369	375	0.80
Transmembrane Helix	376	398	0.89
Non-Cytoplasmic	399	432	0.93
Transmembrane Helix	433	454	0.86
Cytoplasmic	455	464	0.91
Transmembrane Helix	465	486	0.94
Non-Cytoplasmic	487	493	0.85
Transmembrane Helix	494	513	0.95
Cytoplasmic	514	540	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFDPPNHR YSALVLILLL LGFSVAAADD VSWTEDSSLE SPGCTNKFQM VKVLNWVDGV  60
   61 EGDFLTGLTA QFGAALPSVP DQALRFPAAF VDPLDSCSHL SSRLDGHIAL SIRGNCAFTE 120
  121 KAKHAEAAGA SALLVINDKE DLDEMGCMEK DTSLNVSIPV LMISKSSGDA LNKSMVDNKN 180
  181 VELLLYAPKR PAVDLTAGLL LLMAVGTVVV ASLWSELTDP DQANESYSIL AKDVSSAGTR 240
  241 KDDPEKEILD ISVTGAVFFI VTASIFLLLL FYFMSSWFVW VLTIFFCIGG MQGMHNIIMA 300
  301 VILRKCRHLA RKSVKLPLLG TMSVLSLLVN IVCLAFAVFW FIKRHTSYSW VGQDILGICL 360
  361 MITALQVVRL PNIKVATVLL CCAFVYDIFW VFISPLIFHE SVMIVVAQGD SSTGESIPML 420
  421 LRIPRFFDPW GGYDMIGFGD ILFPGLLISF ASRYDKIKKR VISNGYFLWL TIGYGIGLLL 480
  481 TYLGLYLMDG HGQPALLYIV PCTLGLAVIL GLVRGELKEL WNYGIEESES HTPEDPMPVA 540
  541