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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|249840
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPLVPALVM LGLMAGAHGD SKPVFVKVPE DQTGLSGGVA SFVCQATGEP KPRITWMKKG  60
   61 KKVSSQRFEV IEFDDGAGSV LRIQPLRVQR DEAIYECTAT NSLGEINTSA KLSVLEEDQL 120
  121 PSGLPTIDMG PQLKVVEKAR TATMLCAAGG NPDPEISWFK DFLPVDPASS NGRIKQLRSG 180
  181 ALQIESSEES DQGKYECVAT NSAGTRYSAP ANLYVRVRRV APRFSIPPSS QEVMPGGNVN 240
  241 LTCVAVGAPM PYVKWMMGAE ELTKEDEMPV SRNVLELSNV MRSANYTCVA ISSLGMIEAT 300
  301 AQVTVKALPK PPIDLVVTET TATSVTLTWD SGNTEPVSFY GIQYRAAGTD GPFQEVDGVA 360
  361 STRYSIGGLS PFSEYAFRVL AVNSIGRGPP SEAVRARTGE QAPSSPPRRV QARMLSASTM 420
  421 LVQWDPEEPN GLVRGYRVYY TPDSRRPLSA WHKHNTDAGL LTTVGSLLPG ITYSLRVLAF 480
  481 TAVGDGPPSP TIQVKTQQGV PAQPADFQAK AELDTRIQLS WLLPPQERII KYEVVYWAAE 540
  541 DEGQQHKVTF DPTSSYTLED LKPDTLYHFQ LAARSDLGVG VFTPTVEART AQSTPSAPPQ 600
  601 KVTCVSTGST TVRVSWVPPP ADSRNGIITQ YSVAYEAVDG EDRKRHVVDG ISREHSSWDL 660
  661 LGLEKWTEYR VWVRAHTDVG PGPESSPVLV RTDEDVPSGP PRKVEVEPLN STAVHVSWKL 720
  721 PVPNKQHGQI RGYQVTYVRL ENGEPRGQPI IQDVMLAEAQ ETTISGLTPE TTYSITVAAY 780
  781 TTKGDGARSK PKVVTTTGAV PGRPTMMVST TAMHTALLQW HPPKELPGEL LGYRLQYRRA 840
  841 DEARPNTIDF GKDDQHFTVT GLHKGTTYIF RLAAKNRAGP GEEFEKEITT PEDAPSGFPQ 900
  901 NLRVTGLTTS TTELAWDPPV LAERNGRITN YTVVYRDINS QHELQNVTGD VHLTLLGLKP 960
  961 DTTYDIKVRA HTSKGAGPLS PSIQSRTMPM EQVFAKNFRV AAAMKTSVLL SWEVPDSYKS1020
 1021 AVPFKILYNG QSVEVDGHSM RKLIADLQPN TEYSFVLMNR GSSAGGLQHL VSIRTAPDLL1080
 1081 PQKPLPASAF IEDGRFSLSM PQVQDPSLVR WFYIVVVPID RVGGNLLAPR WSTPEELELD1140
 1141 ELLEAIEQGE EKQRRRRRQA ERLKPYVAAQ LDELPETFTL GDKKNYRGFY NRPLSPDLSY1200
 1201 QCFVLASLKE PMDQKRYASS PYSDEIVVQV TPAQQQEEPE MLWVTGPVLA VILIILIVIA1260
 1261 ILLFKRKRTH SPSSKDEQSI GLKDSLLAHS SDPVEMRRLN YQTPGMRDHP PIPITDLADN1320
 1321 IERLKANDGL KFSQEYESID PGQQFTWENS NSEVNKPKNR YANVIAYDHS RVLLTSIDGV1380
 1381 PGSDYINANY IDGYRKQNAY IATQGPLPET MGDFWRMVWE QRTATVVMMT RLEEKSRVKC1440
 1441 DQYWPARGTE TYGLIQVTLV DTVELATYTM RTFALHKSGS SEKRELRQFQ FMAWPDHGVP1500
 1501 EYPTPILAFL RRVKACNPLD AGPMVVHCSA GVGRTGCFIV IDAMLERMKH EKTVDIYGHV1560
 1561 TCMRSQRNYM VQTEDQYVFI HEALLEAAMC GHTEVLARNL YAHIQKLGQV PPGESVTAME1620
 1621 LEFKLLANSK AHTSRFISAN LPCNKFKNRL VNIMPYELTR VCLQPIRGVE GSDYINASFL1680
 1681 DGYRQQKAYI ATQGPLAEST EDFWRMLWEH NSTIIVMLTK LREMGREKCH QYWPAERSAR1740
 1741 YQYFVVDPMA EYNMPQYILR EFKVTDARDG QSRTIRQFQF TDWPEQGVPK TGEGFIDFIG1800
 1801 QVHKTKEQFG QDGPITVHCS AGVGRTGVFI TLSIVLERMR YEGVVDMFQT VKTLRTQRPA1860
 1861 MVQTEDQYQL CYRAALEYLG SFDHYAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle