YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42569794, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGCLLHQL CDVLIFNHDP PRCVGCEDCG GPSHCGTSCS ALVSENVRGY DVCTSLGHAS  60
   61 STKVDIIDKE DPGKGVIVQM STGNRNQNCS LSVSVICQKT KVDGPLTLAK SGTCQYATQL 120
  121 RHPAGCAAAI SGHSSGWGWF STLLIIILCL FGAYLVGGAV YRYFSLGIRG IDVIPNMDYW 180
  181 ATVPHSIQSC FGSLFSRFGG SIRGQQTSYS QVNF

Type	Start	End	Confidence
Cytoplasmic	1	136	0.90
Transmembrane Helix	137	160	0.88
Non-Cytoplasmic	161	180	0.79
Transmembrane Helix	181	200	0.64
Cytoplasmic	201	214	0.74