YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30687969
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTTTTNTMA MLQNLVFSVP ISRMVVRRHS LATTFSAAAT TVVPSPKPVS AKPARTPHVD  60
   61 SHVLIGMSEP ELQELAINLV LIFQEGYRGK QLHHLIYKRK VNKVEDFSNL PLTFRKGLVD 120
  121 GGFKVGRSPI YQTVTATDGT IKLLLKLEDN LLIETVGIPV QDDEKGITRL TACVSSQVGC 180
  181 PLRCSFCATG KGGFSRNLQR HEIIEQVLAI EDVFKHRVTN VVFMGMGEPM LNLKSVLDAH 240
  241 RCLNKDIEIG QRMITISTVG VPNTIKKLAS HKLQSTLAVS LHAPNQSLRE KIVPSAKAYP 300
  301 LEAIMKDCRD YFQETNRRVS FEYALLAGVN DQVEHAVELA ELLREWGKTY HVNLIPYNPI 360
  361 EGSEYQRPYK KAVLAFAAAL ESRKITASVR QTRGLDASAA CGQLRNKFQK SPLLTETDSQ 420
  421 ESQPDAEAVA C

Type	Start	End	Confidence
Signal Peptide	1	51	0.54
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	431	0.99