YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FEI2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGICLMKRCC SWFLLISFLS ALTNENEAIS PDGEALLSFR NGVLASDGVI GLWRPEDPDP  60
   61 CNWKGVTCDA KTKRVIALSL TYHKLRGPLP PELGKLDQLR LLMLHNNALY QSIPASLGNC 120
  121 TALEGIYLQN NYITGTIPSE IGNLSGLKNL DLSNNNLNGA IPASLGQLKR LTKFNVSNNF 180
  181 LVGKIPSDGL LARLSRDSFN GNRNLCGKQI DIVCNDSGNS TASGSPTGQG GNNPKRLLIS 240
  241 ASATVGGLLL VALMCFWGCF LYKKLGRVES KSLVIDVGGG ASIVMFHGDL PYASKDIIKK 300
  301 LESLNEEHII GCGGFGTVYK LSMDDGNVFA LKRIVKLNEG FDRFFERELE ILGSIKHRYL 360
  361 VNLRGYCNSP TSKLLLYDYL PGGSLDEALH KRGEQLDWDS RVNIIIGAAK GLAYLHHDCS 420
  421 PRIIHRDIKS SNILLDGNLE ARVSDFGLAK LLEDEESHIT TIVAGTFGYL APEYMQSGRA 480
  481 TEKTDVYSFG VLVLEVLSGK LPTDASFIEK GFNIVGWLNF LISENRAKEI VDLSCEGVER 540
  541 ESLDALLSIA TKCVSSSPDE RPTMHRVVQL LESEVMTPCP SDFYDSSSD

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	238	0.99
Transmembrane Helix	239	261	0.85
Cytoplasmic	262	272	0.82
Transmembrane Helix	273	293	0.46
Non-Cytoplasmic	294	589	0.59