YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42569679
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLRSLMLA AALAVALAVT GFAASPLPSA YAKYAAGPTK ILPLQRAFPL DELVELSELR  60
   61 ARDRVRHARI LLGGGRQSSV GGVVDFPVQG SSDPYLVGSK MTMLYFTKVK LGSPPTEFNV 120
  121 QIDTGSDILW VTCSSCSNCP HSSGLGIDLH FFDAPGSLTA GSVTCSDPIC SSVFQTTAAQ 180
  181 CSENNQCGYS FRYGDGSGTS GYYMTDTFYF DAILGESLVA NSSAPIVFGC STYQSGDLTK 240
  241 SDKAVDGIFG FGKGKLSVVS QLSSRGITPP VFSHCLKGDG SGGGVFVLGE ILVPGMVYSP 300
  301 LVPSQPHYNL NLLSIGVNGQ MLPLDAAVFE ASNTRGTIVD TGTTLTYLVK EAYDLFLNAI 360
  361 SNSVSQLVTP IISNGEQCYL VSTSISDMFP SVSLNFAGGA SMMLRPQDYL FHYGIYDGAS 420
  421 MWCIGFQKAP EEQTILGDLV LKDKVFVYDL ARQRIGWASY DCSMSVNVSI TSGKDIVNSG 480
  481 QPCLNISTRD ILIRLFFSIL FGLLLCIFFS LT

Type	Start	End	Confidence
Signal Peptide	1	32	0.90
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	490	0.97
Transmembrane Helix	491	511	0.92
Cytoplasmic	512	512	0.87