YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571079, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLRSLMLA AALAVALAVT GFAASPLPSA YAKYAAGPTK ILPLQRAFPL DELVELSELR  60
   61 ARDRVRHARI LLGGGRQSSV GGVVDFPVQG SSDPYLVGLY FTKVKLGSPP TEFNVQIDTG 120
  121 SDILWVTCSS CSNCPHSSGL GIDLHFFDAP GSLTAGSVTC SDPICSSVFQ TTAAQCSENN 180
  181 QCGYSFRYGD GSGTSGYYMT DTFYFDAILG ESLVANSSAP IVFGCSTYQS GDLTKSDKAV 240
  241 DGIFGFGKGK LSVVSQLSSR GITPPVFSHC LKGDGSGGGV FVLGEILVPG MVYSPLVPSQ 300
  301 PHYNLNLLSI GVNGQMLPLD AAVFEASNTR GTIVDTGTTL TYLVKEAYDL FLNAISNSVS 360
  361 QLVTPIISNG EQCYLVSTSI SDMFPSVSLN FAGGASMMLR PQDYLFHYGI YDGASMWCIG 420
  421 FQKAPEEQTI LGDLVLKDKV FVYDLARQRI GWASYDCSMS VNVSITSGKD IVNSGQPCLN 480
  481 ISTRDILIRL FFSILFGLLL CIFFSLT

Type	Start	End	Confidence
Signal Peptide	1	32	0.90
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	485	0.97
Transmembrane Helix	486	506	0.92
Cytoplasmic	507	507	0.87