YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18252305
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYTMISSEAM KMVQYDQGED RWLCTLLLKA GSRVEYCAAS DAYTHAPESF NEFYNQRRRW  60
   61 VPSTIANIFD ILADADTVVK KNNSISTMYV WYQGMLMIGT VLGPGTIFLM MVGALVAVFS 120
  121 IDIWTAFLWN FFPILLFILA CVYLKQKFQL LIAFVISSVY CLVMMAVLIG IIVQMLEDGP 180
  181 LAPASLFFLL VAVQITIAGF MHPQEFWALL CGVIYYITIP SMYMLLMIFS VFNMNDVSWG 240
  241 TREAPVLKDD GKDAVDEANN YLPGWLNDPL LIDSELGEVS LMEQRFWKDL IKQYLKPLEL 300
  301 SREQKQAMAD GLKELRNMIA FAFVMVNAIF VLIVFLLQLK KEFLHLEWPI DPTDFVSFDR 360
  361 DNLMVGIYRQ YKELDPIGLC FVIFFGLILI IQFLAMFFHR FATLCQLLAT TQVDWFRTGG 420
  421 QFTDEDAATE LKGSAVSIAR KLQRPKRLFD DDEDGDPHYD EVLMDSLEGE HRESMVRRQT 480
  481 IFRLHETRDK QHSDYSNLVF NFERRFFGDD ELNLKNLALN RKSVKLLQAR RSAAKVNAAA 540
  541 TPEGTPTPKA GKRPPVGPMA KKVSFTASNR NNMALYDNGG YEHTEF

Type	Start	End	Confidence
Cytoplasmic	1	89	0.99
Transmembrane Helix	90	117	0.81
Non-Cytoplasmic	118	122	0.75
Transmembrane Helix	123	144	0.90
Cytoplasmic	145	150	0.88
Transmembrane Helix	151	173	0.94
Non-Cytoplasmic	174	180	0.82
Transmembrane Helix	181	200	0.94
Cytoplasmic	201	208	0.73
Transmembrane Helix	209	231	0.90
Non-Cytoplasmic	232	317	0.98
Transmembrane Helix	318	339	0.93
Cytoplasmic	340	376	0.97
Transmembrane Helix	377	398	0.94
Non-Cytoplasmic	399	586	0.98