YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5921280
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.91
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	273	0.96
Transmembrane Helix	274	297	0.88
Cytoplasmic	298	348	0.95
Transmembrane Helix	349	371	0.85
Non-Cytoplasmic	372	622	0.98
Transmembrane Helix	623	644	0.90
Cytoplasmic	645	655	0.91
Transmembrane Helix	656	680	0.89
Non-Cytoplasmic	681	685	0.79
Transmembrane Helix	686	708	0.92
Cytoplasmic	709	728	0.95
Transmembrane Helix	729	753	0.81
Non-Cytoplasmic	754	761	0.80
Transmembrane Helix	762	787	0.88
Cytoplasmic	788	836	0.91
Transmembrane Helix	837	855	0.81
Non-Cytoplasmic	856	1106	0.58
Transmembrane Helix	1107	1128	0.87
Cytoplasmic	1129	1132	0.59
Transmembrane Helix	1133	1154	0.90
Non-Cytoplasmic	1155	1160	0.59
Transmembrane Helix	1161	1183	0.85
Cytoplasmic	1184	1203	0.67
Transmembrane Helix	1204	1225	0.88
Non-Cytoplasmic	1226	1236	0.61
Transmembrane Helix	1237	1261	0.86
Cytoplasmic	1262	1287	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPRSPLRIS PFGVHILIAA VLFTLIQSSK QDCVWYGVCN TNDFSHSQNC PYNGTAKEMA  60
   61 TDGLELLKKR CGFLLENSEN KFCCDKNQVE LLNKNVELAG NILDRCPSCM ENLVRHICQF 120
  121 TCSPKQAEFM HVVATQKNKK GDEYISSVDL HISTEYINKT YKSCSQVSVP QTGQLAFDLM 180
  181 CGAYSASRCN PTKWFNFMGD ATNPYVPFQI TYIQHEPKSN SNNFTPLNVT TVPCNQAVSS 240
  241 KLPACSCSDC DLSCPQGPPE PPRPEPFKIV GLDAYFVIMA AVFLVGVLVF LMGSFLFTQG 300
  301 SSMDDNFQVD GNDVSDEMPY SENDSYFEKL GAHTETFLET FFTKWGTYFA SNPGLTLIAG 360
  361 ASLVVILGYG INFIEITTDP VKLWASPNSK SRLEREFFDT KFSPFYRLEQ IIIKAVNLPQ 420
  421 IVHNTSNGPY TFGPVFDREF LTKVLDLQEG IKEINANGTQ LKDICYAPLS DDGSEIDVSQ 480
  481 CVVQSIWGYF GDDRERLDDH DEDNGFNVTY LDALYDCISN PYLCLAPYGG PVDPAIALGG 540
  541 FLPPGDQLTG STKFELANAI ILTFLVKNHH NKTDLENALT WEKKFVEFMT NYTKNNMSQY 600
  601 MDIAFTSERS IEDELTRESQ SDVLTILVSY LIMFMYIAIS LGHVKEFKRV FIDSKITLGI 660
  661 GGVIIVLASV VSSVGVFGYI GLPATLIIVE VIPFLVLAVG VDNIFILVQT HQRDQRKPNE 720
  721 TLEQQVGRIL GKVGPSMLLT SLSESFCFFL GGLSDMPAVR AFALYAGVAL IIDFLLQITC 780
  781 FVSLFTLDTK RREENRMDIC CFIKGKKPDS ITSNEGLLYK FFSSVYVPFL MKKIVRASVM 840
  841 VIFFAWLCFS IAIAPRIDIG LDQELAMPQD SFVLHYFQSL NENLNIGPPV YFVLKGDLAY 900
  901 TNSSDQNLVC AGQYCNDDSV LTQIYLASRH SNQTYIARPA SSWIDDYFDW AAAASSCCKY 960
  961 RKDSGDFCPH QDTSCLRCNI TKNSLLRPEE KEFVKYLPFF LKDNPDDTCA KAGHAAYGGA1020
 1021 VRYSNSHERL NIEASYFMAY HTILKSSADY FLALESARKI SANITQMLQG RLMSNGVPMA1080
 1081 SALTVEVFPY SVFYVFYEQY LTMWSDTLQS MGISVLSIFV VTFVLMGFDV HSALVVVITI1140
 1141 TMIVVNLGGL MYYWNISLNA VSLVNLVMAV GISVEFCSHL VHSFATSKSV SQIDRAADSL1200
 1201 SKMGSSIFSG ITLTKFAGIL VLAFAKSQIF QVFYFRMYLG IVVIGAAHGL IFLPVLLSYI1260
 1261 GAPVSNARLR YHSQAAAEHE TALAGIL