YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10303238
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKIYLPVN YYYLNKSTNL YGQVQINEDN VVSYYVLEAS DLEFSDKAIN HEKGNLRFLG  60
   61 SILNEDFNAD QNQFLKFNMR LCFTYNSSQA NITLVYLGIT PEYLKHIKVI LYDKQMVRNL 120
  121 FVSGESENRR SLEYNDNDST DCDFLELSRL NQPTADNQNK ANNNANKSIQ YGLTLIADSP 180
  181 IKIFEYMAEN VFINSIMVHT TIYKHFKEWQ TACDKRSRPA NIVLDRILGI ILMLILFSLA 240
  241 TQPGDFLIQI SHYVIDELYG LLKVLEGSPI GLKLNIHLNN FFLDCFKYHI ELWSTFLDFI 300
  301 EPLVRQVFLA IGMIGCLGFT FQIALLVDLI SVIGLHSHCF YIYTKVLYNV ERRGLSVLWQ 360
  361 VVRGNRYNIL KGRTESHNYM NRQLYLATIF FSAILFLLPT TLVYYIVFAA LKALTFATLS 420
  421 VFHFVRRKLM YLPIEVCIKR LLRGCHEIDC IQIKDVSHHE RAFLMHKQQK INVTVYKITT 480
  481 L

Type	Start	End	Confidence
Cytoplasmic	1	221	0.92
Transmembrane Helix	222	242	0.86
Non-Cytoplasmic	243	306	0.90
Transmembrane Helix	307	327	0.89
Cytoplasmic	328	380	0.87
Transmembrane Helix	381	400	0.86
Non-Cytoplasmic	401	404	0.55
Transmembrane Helix	405	425	0.83
Cytoplasmic	426	481	0.92