YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPCS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYVDREAP KLWRRIYSEA TLEASLLAEK WKLVLAGLVF QYIHGLAAHG VHYLHRPGPT  60
   61 LQDAGFFILP ALGQDKAFFS ETVFVTIFGS FILWTFHPFV SHSKKICTVL IWCRVFVYLA 120
  121 ASQSLRIITF FATQLPGPNY HCREGSKLAK IPPPKNVLEV LLINFPDGVI YGCGDLIFSS 180
  181 HTIFTLVFVR TYQRYGTRRW IKHLAWLMAV IQSILIIASR KHYTVDIVVA WYTVNLVMFY 240
  241 VDSKLPEMAE RSSGPSPTPL LPLSTKDSKN KSKEDHQRLL NENNVADDH

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	53	0.88
Non-Cytoplasmic	54	76	0.93
Transmembrane Helix	77	97	0.93
Cytoplasmic	98	109	0.78
Transmembrane Helix	110	130	0.91
Non-Cytoplasmic	131	167	0.95
Transmembrane Helix	168	189	0.90
Cytoplasmic	190	199	0.84
Transmembrane Helix	200	219	0.83
Non-Cytoplasmic	220	226	0.63
Transmembrane Helix	227	243	0.62
Cytoplasmic	244	289	0.70