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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6946673
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGNRKSET KTKTEAEIEI EMERDQFSIA ANACMSMGPM LISKDKAPCS GGRVRHADSL  60
   61 HIYYAVDGKM TLLSNILDCG GCISAQRFTR LLRQSGSSGP SPSAPTAGTF ESKSMLEPTS 120
  121 SHSLATGRVP LLHDFDASTT ESPGTYVLDG VARVAQLALE PTVMDALPDS DTEQVLGNLN 180
  181 SSAPWNLTLA SAAATNFENC SALFVNYTLP QTEFAIRKCE LDGRWGSRPN ATEVNPPGWT 240
  241 DYGPCYKPEI IRLMQQMGSK DFDAYIDIAR RTRTLEIVGL CLSLFALIVS LLIFCTFRSL 300
  301 RNNRTKIHKN LFVAMVLQVI IRLTLYLDQF RRGNKEAATN TSLSVIENTP YLCEASYVLL 360
  361 EYARTAMFMW MFIEGLYLHN MVTVAVFQGS FPLKFFSRLG WCVPILMTTV WARCTVMYMD 420
  421 TSLGECLWNY NLTPYYWILE GPRLAVILLN FCFLVNIIRV LVMKLRQSQA SDIEQTRKAV 480
  481 RAAIVLLPLL GITNLLHQLA PLKTATNFAV WSYGTHFLTS FQGFFIALIY CFLNGEVRAV 540
  541 LLKSLATQLS VRGHPEWAPK RASMYSGAYN TAPDTDAVQP AGDPSATGKR ISPPNKRLNG 600
  601 RKPSSASIVM IHEPQQRQRL MPRLQNKARE KGKDRVEKTD AEAEPDPTIS HIHSKEAGSA 660
  661 RSRTRGSKWI MGICFRGQMC DAGLAKDAAN IHDVANAADV DACSGSNNNY HNINNNNGSQ 720
  721 NNNSIHCNHR DDDKVKGESQ SDFKEPSNTN AESLVHLALF TAHTSNTQNN THRNTIFTPI 780
  781 RRRNCS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle