YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3135761
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHINMKQFMC LSLALFASVA VAQPYGQSPA SYGAPAPAPA PAASLASLVN LEALERYLNA  60
   61 PAPAPAAYGG SSTYSQARYV SAGGSPSAGP VTSTSYSAAP ASSAGSSAPS GGYGGSDEPI 120
  121 LFVNEIPAAG YSSSGGYSAP APAPAASYSA PAPSYTAPAP SYSAPAPSYS APAATYSAPT 180
  181 ATYSVPAPSY SAPAPSYSAP APSYSAPAPS YSAPSSSYAA PAPASYSAPA PAPAAGYGAA 240
  241 PSSGYGGASA APKYTVLPAT ITQLNPGKTS YKTYQSPIQY STVTLPVTAA GPVANLYVPE 300
  301 NAGGSYGASA GYGSSSGSSS YGGSSY

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	326	0.99