YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3256109
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSTTNLLII NLAVSDILFV IFCVPFTATD YVLPEWPFGN VWCKFVQYMI VVTCHCSVYT  60
   61 LVLMSFDRFL AVVHPVTSMS LRTERNATLY LSPWLLTNSS DKNQSVPDLA QTQQKIFIYA 120
  121 FSAFCILFQV SFFLSSYVAP LTLICFLYMG MLARLWKSAP GCKPSAESRK GKRRVTRMVV 180
  181 VVVLAFAICW LPIHVILVLK ALNLYGGSHL SVIIQIISHV VAYTNSCINP ILYAFLSDNF 240
  241 RKAFRKVGNA SIYQYIYDHS VIM

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	29	0.92
Non-Cytoplasmic	30	44	0.88
Transmembrane Helix	45	66	0.82
Cytoplasmic	67	115	0.85
Transmembrane Helix	116	133	0.89
Non-Cytoplasmic	134	137	0.71
Transmembrane Helix	138	156	0.93
Cytoplasmic	157	176	0.90
Transmembrane Helix	177	198	0.93
Non-Cytoplasmic	199	214	0.81
Transmembrane Helix	215	236	0.87
Cytoplasmic	237	263	0.95