YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10190801
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKPGLGRK TSNKNPPILS HEFVIQNHAD IISCVAMVFV VGLMNESTAA FASAFISLHH  60
   61 NVSGEDPSRE QPYGKPYTYI AGIKDYCAIF FYTLTCIIMH AIIQEFVLDN ISKKLHLSKF 120
  121 KLARFNESGQ LVAFYLLSFV WGAHVLLKEG YLGQVAQLWE GFPDHPMSFL HKFYFVVQLA 180
  181 YYLHMLPELY FQKIKTKEEQ QPKIVHSISG FTLIVLAYTL SFQRLALVLL TLHYFSELLS 240
  241 HVFQLIGVFD REERLAKLRV VNNAVFFLIR FATSVIGVLT LYYGIGGVRS LLALGGLIAL 300
  301 QGYLVFSFIT EQLRAKREAK KEAKREAKLA LQTKKPAKTP KDKVKRKKES DLPEADQTSP 360
  361 SPIKQKLK

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	54	0.78
Non-Cytoplasmic	55	87	0.87
Transmembrane Helix	88	108	0.89
Cytoplasmic	109	127	0.90
Transmembrane Helix	128	147	0.91
Non-Cytoplasmic	148	167	0.92
Transmembrane Helix	168	186	0.89
Cytoplasmic	187	203	0.84
Transmembrane Helix	204	222	0.92
Non-Cytoplasmic	223	229	0.70
Transmembrane Helix	230	249	0.90
Cytoplasmic	250	263	0.84
Transmembrane Helix	264	285	0.88
Non-Cytoplasmic	286	290	0.78
Transmembrane Helix	291	310	0.94
Cytoplasmic	311	368	0.97