YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1731967
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCPPTMRPA SPAESEISVG GAPSPLPTQD HTHPHSHPHP LQDPRASTID LLQQQQLLMQ  60
   61 HHAAAAAAAA AAASGLTRSA VGNLAEDYFH PLKRLRMSSS SSEPREHTAS PPSAVPEPQT 120
  121 NQTTKSAIEG VKSFSIADIL GHSEKQREES VSPPPNANLL APPASRPIAP SGGLLQPRTE 180
  181 PLDVHPAAAA AMLLPSGQIV RPWDHLLGPT MPVRPFIPSA LLHYEQRLAL DYHRQLQEHF 240
  241 NAQAQLLRHM GMNPAIIASE DGSSERSQRS SSSNGSTECC SPRQAEKLEK LTTQEGSEEA 300
  301 QKKKSEEQPT GSGKSNGDTP LDALFQMTTK DFDESQDKSH LDIFSDRPQP KKKRKSRTAF 360
  361 TNHQIFELEK RFLYQKYLSP ADRDEIAASL GLSNAQVITW FQNRRAKQKR DIEELKKDFD 420
  421 SVKVFSAHKS FLENVNDLSI LKKKPMHESD MVGLAAAAAA AGMVVLVPGS VPMGGAPPK

Type	Start	End	Confidence
Cytoplasmic	1	450	0.54
Transmembrane Helix	451	472	0.80
Non-Cytoplasmic	473	479	0.65