YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63147406, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLGNFGVW GFGFFSLSIW FAVLQQANGL RPIRETARSW GDEWLFGKKE KGGAGPFSAW  60
   61 NITGTYRGTW KFLDTVNSSS KFPDFRKESG NSVIELVTSP TKITGVHYVQ GAVVFHDVFD 120
  121 NEHNVGGAQI KVEGVYIWPF RQLRLVANSG KKSDSGLEDD YLLSNPYHLL GIFSSQVFQE 180
  181 SPRDRILKQK TSPIYEMEKH CNIEIAAQIS QSTSSENNGD KDRYQIEGLM ESPAVDDEVD 240
  241 CFSPLSLNAT SINVEVYYNK AVNYTLMVTF VSFLQVLLLI RQMEHSNTQS GAAKVSIVMI 300
  301 GQQAIMDSYL CLLHLTAGIL VESLFNAFAT AAFFKFVVFS IFEMRYLLSI WKATRPSTSG 360
  361 EGWETMRREL SFLYSRFYGI LLGGILLMYE FHNYMRPILL LMYSFWIPQI VANVVRDSRK 420
  421 PLHPYYILGM TVTRLAIPLY VFGCPKNFMR VEPSKAWCVS LCAFMGFQAG VLLLQHYFGS 480
  481 RCFVPRKLLP EKYSYYRRLD HNVNRSRDCV ICMTTIDLRH RINDCMVTPC EHIFHSGCLQ 540
  541 RWMDIKMECP TCRRPLPPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	28	0.77
Cytoplasmic	29	260	0.66
Transmembrane Helix	261	280	0.62
Non-Cytoplasmic	281	323	0.44
Transmembrane Helix	324	349	0.72
Cytoplasmic	350	371	0.92
Transmembrane Helix	372	391	0.91
Non-Cytoplasmic	392	397	0.68
Transmembrane Helix	398	415	0.57
Cytoplasmic	416	421	0.54
Transmembrane Helix	422	444	0.78
Non-Cytoplasmic	445	455	0.48
Transmembrane Helix	456	479	0.88
Cytoplasmic	480	559	0.53