YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KEA4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	36	0.74
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	168	0.97
Transmembrane Helix	169	189	0.87
Cytoplasmic	190	194	0.74
Transmembrane Helix	195	214	0.87
Non-Cytoplasmic	215	220	0.80
Transmembrane Helix	221	241	0.90
Cytoplasmic	242	248	0.80
Transmembrane Helix	249	272	0.87
Non-Cytoplasmic	273	278	0.81
Transmembrane Helix	279	299	0.93
Cytoplasmic	300	310	0.87
Transmembrane Helix	311	333	0.85
Non-Cytoplasmic	334	345	0.72
Transmembrane Helix	346	368	0.85
Cytoplasmic	369	384	0.85
Transmembrane Helix	385	401	0.80
Non-Cytoplasmic	402	405	0.53
Transmembrane Helix	406	425	0.57
Cytoplasmic	426	434	0.59
Transmembrane Helix	435	456	0.89
Non-Cytoplasmic	457	461	0.66
Transmembrane Helix	462	485	0.89
Cytoplasmic	486	491	0.61
Transmembrane Helix	492	513	0.84
Non-Cytoplasmic	514	522	0.58
Transmembrane Helix	523	547	0.79
Cytoplasmic	548	592	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRCKNNTDK FSVITMRLLT LLLICTFFFF FSFAYSAESD NETDSVVTRE INGTVVESNA  60
   61 TSAKPREDSF ADMIDRALEK EFPDNDQNEV PDPGSFNNSV ADQQAVLETV ARVKPKKNET 120
  121 KTKEEKSFFN LDNENGVEDT PRLIDRKDNV FIMSNPKSKY PVLQLDLRLI SDLVVVIVSA 180
  181 TCGGIAFACA GQPVITGYLL AGSIIGPGGL SFVSEMVQVE TVAQFGVIFL LFALGLEFSA 240
  241 AKLRVVRAVA IPGGLLQIFL FMCLSGITAS LCGGKLTEGI FVGAFLSMSS TAVVLKFLME 300
  301 RNSISALHGQ ITVGTLILQD CAVGLLFALL PVLGGTSGVL QGVLSMAKSL AILIAFLGAL 360
  361 FVLSRTWVPW FLKLMTSLSS QTNELYQLAA VAFCLLVAWC SDKLGLSLEL GSFAAGVMIS 420
  421 TTDLAQHTLE QVEPIRNFFA ALFLASIGML IHMHFLWNHV DILLAAVLLV IVIKTVVVAI 480
  481 VVKVFGYNNK TAVLVGMSLA QIGEFAFVLL SRASNLHLIE SKLYLLLLGT TALSLVTTPL 540
  541 LFKLIPAVVH LGVLLRWFSP DSSTEIGFKG ELYHSESAKR ISLMIQGSLH DS