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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ph-d-PB
Protein type: Transmembrane
Type Confidence: 0.64
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVQQQLQLQ QQLSEANGGG AASAGAGGAA SPANSQQSQQ QQHSTAISTM SPMQLAAATG  60
   61 GVGGDWTQGR TVQLMQPSTS FLYPQMIVSG NLLHPGGLGQ QPIQVITAGK PFQGNGPQML 120
  121 TTTTQNAKQM IGGQAGFAGG NYATCIPSNH NQSPQTVLIS PVNVISHSPQ QQQNLLQSMA 180
  181 AAAQQQQLTQ QQQQQLNQQQ QQLNQQQQQQ QLTAALAKVG VDAQGKLAQK VVQKVTTTSS 240
  241 TVQAATGPGS TGSTQTQQVQ QVQQQQQQTT QTTQQCVQVS QSTLPVGVGG QSVQTAQLLN 300
  301 AGQAQQMQIP WFWQNAAGLQ PFGSNQIILR NQPDGTQGMF IQQQPATQTL QTQQNQIIQC 360
  361 NVTQTPTKAR TQLDALAPKQ QQQQQQVGTT NQTQQQQLAV ATAQLQQQQQ QLTAAALQRP 420
  421 GAPVMPHNGT QVRPASSVST QTAQNQSLLK AKMRNKQQPV RPALATLKTE IGQVAGQNKV 480
  481 VGHLTTVQQQ QQATNLQQVV NAAGNKMVVM STTGTPITLQ NGQTLHAATA AGVDKQQQQL 540
  541 QLFQKQHILQ QQMLQQQIAA IQMQQQQAAV QAQQQQQQQV SQQQQVNAQQ QQAVAQQQQA 600
  601 VAQAQQQQRE QQQQVAQAQA QHQQALANAT QQILQVAPNQ FITSHQQQQQ QQLHNQLIQQ 660
  661 QLQQQAQAQV QAQVQAQAQQ QQQQREQQQN IIQQIVVQQS TGATSQQQQQ QPQQQSGQLQ 720
  721 LSSVPFSVSP SMTAEDIAGI TSSALQEALS VSGAIFQTTK PITCSSSTLP TSSVVTITSQ 780
  781 SSTPLVTSST VASMQQAQTQ GTQIHQHQQL ISATIAGGSQ QQQQQQQLGL PSLTPTTPSP 840
  841 TTNPILAMTS MMNATVGHLS TAPPVSVSST AVTPSSGQLV TLSSASSGGG AGFPATPTKE 900
  901 TPSKGPTATL VPIDSPKTPV SGKDTCTTPK SSTPATVSAS VEASSSTGEA LSNGDASDRS 960
  961 STPSKGATTP TSKQSNAAVQ PPSSTIPNSV SGKEEPKLTT CGSLTSATST STTTTITNGI1020
 1021 GVARTTASTA VSTASTTTTS SGTFTTSCTS TTTTTTSSIS NGSKDLPKAM IKPNVLTHVI1080
 1081 DGFIIQEANE PFPVTRQRYA DKDVSDEPPK KKATMQEDIK LSGIASAPGS DMVACEQCGK1140
 1141 MEHKAKLKRK RYCSPGCSRQ AKNGIGGVGS GETNGLGTGG IVGVDAMALV DRLDEAMAEE1200
 1201 KMQTESYQTV SDALPIQAAT PEVPPISMPV LAAMSTSSPL SLPLTLPLPI AIAPTVSLPV1260
 1261 VSAGVVAPVL AIPSSNINGS DRPPISSWSV EEVSNFIREL PGCQDYVDDF IQQEIDGQAL1320
 1321 LLLKENHLVN AMGMKLGPAL KIVAKVESIK EVPPGDVKD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle