YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6249330
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSGGACSP FAYVAWALFA LLLTHGGDNV VDARRNQGNQ RKTSSSSSSS NYGHVTQPSY  60
   61 NTNGHAAGNS HADVAKLSYP NYNSQPNRPM AAGSSGSPGS APQPGWNVPQ GPPPAYSASN 120
  121 PAGGARPNMH EPPPAYHAPN YGAAPPNYGA ATGSNVHQPQ YSGVPAGATY YPAAGPGSGY 180
  181 SPNIPAGATY YPSAGHVPMG GGYHPAAAPP PGATYYQAGS ALPPGATYYS APPQQSSSGL 240
  241 GFGTGLLAGG LGGALLGHAL TPSGGSSSSQ PVAAAPAAGQ DRIIIINNGV PVNASDGTTV 300
  301 INAAGVAAAP GAVPAAPVPS SNTTQDAQQP AVPMAPMPFN PETSNMTAPD PAAPPPPGGI 360
  361 ICVPTKVNET DPADSTKMIE VEKIACYPAP PPPAASAGEG PAPLAPMAAD QPGSQQVQQV 420
  421 QQAQDVAAPI QASVRSHTGG ARALEGLTMR TLLLVLMSGV VAKRLAGF

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	239	0.93
Transmembrane Helix	240	260	0.69
Cytoplasmic	261	445	0.64
Transmembrane Helix	446	466	0.41
Non-Cytoplasmic	467	468	0.65