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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19577376
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMMFRSEEM ALCQMFIQPE AAYTSVSELG ETGAVQFRDL NADVNAFQRK FVSEVRRCDE  60
   61 MERKLRYVEG EVKKDSVQIP ECSVDDWPRA PNPREIIDLE ARLEKTENEI LELSQNAVNL 120
  121 KSNYLELTEL KHVLERTQSF FFEQEVIVST DAAKSNLIAE DPTAAQSRGR LGFVAGVIQR 180
  181 EKMPGFERML WRISRGNIFL RQVELEEPLE DPATGNEIFK TVFVAFFQGE QLKARIKKVC 240
  241 TGYHVSLYPC PSSGSERTDM VKGVCTRLED LRMVLNQTQD HRAIVLASVA KELFSWRIMV 300
  301 KKMKAIYHTL NLFNMDVTKK CLIGECWVPV PDLPKVQKAL SDGSAAVGST IPSFLNVIDT 360
  361 NEAPPTYNRT NKFTRGFQNL IDAYGIASYR EANPALYTII TFPFLFGIMF GDLGHGMIMA 420
  421 LFGLWMVTGE KKLGAKKSTN EIWNIFFGGR YIILLMGLFS MYTGFVYNDI FSKSMNIFGS 480
  481 AWSVNYNTST VMTNKDLTLN PGSTDYDTEI YPIGLDPVWQ LASNKIIFLN SYKMKLSIIF 540
  541 GVVHMIFGVC MSVVNHNFFK KRISIVLEFL PQIIFLVLLF AYMVFMMFMK WIAYTAKTDY 600
  601 QPRTPGCAPS VLIMFINMML FKNSEPFHGC DEFMFEGQNE LQRTFVFIAL LCIPWMLLGK 660
  661 PFYLMFKRKN ASPSLKEDNS LLSLIGHFFL QTPIPNNGDV HQGGDSNHTS SSPKPHDSHD 720
  721 DEPMAEIFIH QAIHTIEYVL STVSHTASYL RLWALSLAHA ELSEVLWNMV LSMGLKQTSY 780
  781 KGAIMLYFVF GAWSLFTLAI LVMMEGLSAF LHTLRLHWVE FMSKFYEGLG YGFQPFSFKL 840
  841 IIDSDDDLE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle