YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18074035
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYPKMGKPV PPQPSCRSRN FRPGSMRRVR RRAVFKNGDC NVVQKHLQRR RVRFLQDMYT  60
   61 TMVDWQWRWT LLAFALSFIL SWLFFALIWW LIIYTHGDLE EPHLPENQEE SGWAPCVSAI 120
  121 DGFTSCFLFS IETQHTIGYG VRTTSPECPE AIFMMCFQSI YGVMSSAFMA GIVFAKMTRA 180
  181 KQRAQTLLFS KHAVICQRDG TLSLMFRVGD MRKSHIIGAG VRAQLIRTKS TKEGEVMTQY 240
  241 FTELEIGTDD SGSDLFFIWP MVIEHKIDEN SPLYNLNATD MLQDKFEIVV ILEGTVESTG 300
  301 QSTQARSSYI NTEILWGHRF DPVVLYNKDL QAYEIDYARF NETTQVDTPL CSARELNEIY 360
  361 KIQEGFRTPE TTFTMRQLSH NHSDQAS

Type	Start	End	Confidence
Cytoplasmic	1	69	0.90
Transmembrane Helix	70	93	0.91
Non-Cytoplasmic	94	153	0.79
Transmembrane Helix	154	175	0.87
Cytoplasmic	176	387	0.78