YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7258392
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLFEILRL FIKKPSSGGT LRAWILSALM VHGAVAGNPD AKRLYDDLLS NYNKLVRPVV  60
   61 NTTDVLKVCI KLKLSQLIDV NLKNQIMTTN LWVEQSWYDY KLRWEPKEYG GVHMLHVPSD 120
  121 HIWRPDIVLY NNADGNFEVT LATKATIYSE GLVEWKPPAI YKSSCEIDVE YFPFDEQTCV 180
  181 LKFGSWTYDG FKVDLRHMDE QQGSNVVAVG VDLSEFYMSV EWDILEVPAV RNEKFYTCCD 240
  241 EPYLDITFNI TMRRKTLFYT VNIIIPCMGI SFLTVLTFYL PSDSGEKVTL SISILISLHV 300
  301 FFLLVVEIIP PTSLVVPLLG KYLIFAMILV SISICVTVVV LNVHFRSPQT HKMAPWVKRV 360
  361 FIDFLPAFLF IKRPTYNFET SKLLLKDTHA CFYPYYSATN IDRLVSSGYN NSLPKEDLSQ 420
  421 SITANGPFGG SCQVHGPVPP LTHCSSDEIA AVPDMDIGPL GMKSPILNNP AFSHSKCLPK 480
  481 IHKSCFCVRF IAEHTKMQED STKVKEDWKY VAMVLDRLFL WIFTLAVVVG TAGIILQAPT 540
  541 LYDDRIPIIE QKDLDFSGTS AGRCRPPQ

Type	Start	End	Confidence
Signal Peptide	1	36	0.94
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	257	0.99
Transmembrane Helix	258	280	0.94
Cytoplasmic	281	287	0.93
Transmembrane Helix	288	310	0.87
Non-Cytoplasmic	311	321	0.80
Transmembrane Helix	322	345	0.91
Cytoplasmic	346	517	0.98
Transmembrane Helix	518	538	0.94
Non-Cytoplasmic	539	568	0.95