YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11602703
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTTIVFVT LLTIITQRKH CAAVDVYFPT TSVKFNLPIN EESESIFSKI PLAQFQVLRM  60
   61 EDNRLASDYL YSLEQNPLLR INSSSGEIYM RTDYRSPNSS ATFLVTAFPR DQPDHELLNV 120
  121 SHLSLEVTPQ PLEEYCSELE HICFWSSAQY TIAESHGPYR RKDFFEPVLI GALNSRAAKY 180
  181 LCPHVSLEYS LNAGSSHFVL KQNRLYTRQT LDHDELNGLN AKAGQLQARI TCTVKLSSRD 240
  241 QRKFSRILDI KLLDRNDNGP KLQESSSKFD FYLEQPYFQA DEEAGKKVIY VDKDTLEANA 300
  301 HLVYAVHNDS HGLFRPDCHA YEADHTGRPH TIVSCQLRFS RNGVFRETPY CVSLEARDLT 360
  361 IVSRVDAMSA TANVCYHINL SKLHESEQEL PQALPLRARL HRIFESEEFN GDSAGRSL

Type	Start	End	Confidence
Signal Peptide	1	21	0.76
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	418	0.99