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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4455392
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMRSSRLL VLPLILVLIL TLLLQPIAVH AKSKKNKSSQ SSHHGDSSSS SSSSSSSSGS  60
   61 SSAAASSAND ESKPKGGDNG GQHFAMEPQD QTAVVGSRVT LPCRVMEKVG ALQWTKDDFG 120
  121 LGQHRNLSGF ERYSMVGSDE EGDFSLDIYP LMLDDDAKYQ CQVGPGPQGE QGIRSRFAKL 180
  181 TVLVPPEAPK ITQGDYLVTT EDREIELECV SQGGKPAAEI TWIDGLGNVL TKGIEYVKEP 240
  241 LADSRRITAR SILKLAPKKE HHNTTFTCQA QNTADRTYRS AKLLLEVKYA PKVIVSVVGG 300
  301 ALAGGKIPEG AEVILSCQAD ANPHELSYRW FINDELMTGD FTTKMIIHNV SRQYHDAIVK 360
  361 CEVVNAVGKS EQSKKLDISC KYSMAISDDI FRQRPVSVEA DLGATVSMRC DVAGNPEPEI 420
  421 EWISENSDQV VGVAAELKLK VSSETAGRYF CKAVVNGFPE IGAEATLYVK RAPIITSHKV 480
  481 QFGGVGGRVK IDCLAFSIPK AEHILWSFEG KIINMSSADP DIYIFEEHHL PEGVRAALII 540
  541 RDSKATHFGK YNCTVLNSYG GDSLVITLLR EPGNIPVLLV VMGSMFCVAI ILMIVMIIIV 600
  601 YRKRRSRKKP MPADVIPEAS RGGDKLNELK SELRSKAYDV EYSEAGGDGL AINLTQSPMP 660
  661 DVQMKGATLG VPLAGPVKFD ERFSGDFGGD RYNRQCHIKN LKNQQETAYK GSPQANGYAH 720
  721 YFEYALDYSP PGGEGAAVVV GSGGVGKLKN GGMNSATLPH SAAATVNGGG AGNGGGASLP 780
  781 RNQRHEIQQS QQSNGFLGNE TDVISTTFAG QPLLQNGIDS RFSAIYGNPY LRTNSSLLPP 840
  841 LPPPSTANPA ATPAPPPYHA ARHGHAHHAN GGLKHFVGGA VITTSPVGNV NINGGGGGGS 900
  901 TPSGGGGVGV GVAAGGSVSG SSSNLTASSN TLAATPLAGG GVGNSGQCAQ SPSGQFILSN 960
  961 NGKGHTQKGP LATHV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle