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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2696009
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.24
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STANPDAKRL YDDLLSNYNK LVRPVVNVTD ALTVRIKLKL SQLIDVNLKN QIMTTNLWVE  60
   61 QSWYDYKLKW EPKEYGGVEM LHVPSDHIWR PDIVLYNNAD GNFEVTLATK ATLNYTGRVE 120
  121 WRPPAIYKSS CEIDVEYFPF DEQTCVMKFG SWTYDGFQVD LRHMDELNGT NVVEVGVDLS 180
  181 EFYTSVEWDI LEVPAVRNEK FYTCCDEPYL DITFNITMRR KTLFYTVNLI IPCMGISFLT 240
  241 ILVFYLPSDS GEKVSLSISI LLSLTVFFLL LAEIIPPTSL VVPLLGKFVL FTMILDTFSI 300
  301 CVTVLVLNIH FRSPQTHTMA YGCGPSSSTN RFLVMRRPLY PISEMIKSSR RLMVRTCNGL 360
  361 ELRDQIPPLP PPVALSRMHH SPKTTSRGSS PHLQHRVQTY NLMDECGMGM GGGASTITGH 420
  421 LSSLYPPTMS TANQQTSTTS SLIDAQYHNQ YQQTGGSLLD HPLTPTKFRQ MTSTSSQTGQ 480
  481 NGSGNGNGNG GYGGHGQSGG HHLYRQQSSC SANFSPLPQH AHQAHASTTT SDLGMANPNV 540
  541 IKSTTTVNSV ATASTLADSC CSCSGTIQIH QGMGAGAACQ SSELLHHQQL HHQQMHHQQQ 600
  601 QQQQQQHHHH QRPTTSAAAA AAAAAAGGPS TSAAAAAAAA AAAAGTPPPP PPPAGVCDIL 660
  661 PACQREGGPH CCSGRGNVRQ RWHTCPELHK AMDGVTYIAD QTRKEEESTR VKEDWKYVAM 720
  721 VLDRLFLWIF TIAVVVGTAG IILQAPTLYD TRMPIDIKLS EIASTTAKPN VARPVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle