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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19032214
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMKSMKYSD CDTIMDGYNP VPPPLPRRVP PVRNIYAEPF AHEPNHSSRL GGHPQQMPQS  60
   61 MSTGSNTIGH GGIDRGGVGL PMGAGTMPGG VGGGPGGVAG GGPQVGVGPP GSGNGGNCQI 120
  121 SGSQPLVMPG FPLRNSHSAH APHYSPYSPS RFHIDKRCQH RCSWKCLSIA LIFVSVVLTA 180
  181 MLAYFAAVSS MKPNMDSTNC ILVQDVKSQP HDLRGGLAKS NEKGVATAFP TEESIQTSTS 240
  241 DHGQNGHGLM NPSAGSGGSN SGIQQQLLLQ QQQPHSINQP LTPLDATNTH LQDHHQLTYG 300
  301 GALPGGVGGI GMSGGGIMNG GLNGGLGGQL MQQPGGGLNG HHHQALQPQL GGVVELKEFN 360
  361 EAYHATIPAY QFWTLEFRNK HPAFIRFNFT LPWGAHFAVY SRRNVAPSVT QHDFVEFIKG 420
  421 GRLDSHLRHR RSSANATTTG QDMELYRQDK DQSAESAQDQ DSEQDESRSF DSSESYDVET 480
  481 PLDTAKQHLQ RIGKPQSHWV NKRSAGDGLP ALDVDAMTVN VSLLQYLDTG LWFISVYNDE 540
  541 LVAHSVSLLA EEAEGVSTTC PNDCSGRGSC YLGKCDCIDG YQGVDCSKSV CPVLCSAHGH 600
  601 YGGGVCHCEE GWKGAECDIP VGECEVPNCS SHGRCIEGEC HCERGWKGPY CDQHDCLDPL 660
  661 CSGHGTCVAG QCYCKAGWQG EDCGTIDQQV YQCLPGCSEH GTYDLETGQC VCERHWTGPD 720
  721 CSQAVCSLDC GRNGVCESGK CRCNSGWTGN LCDQLPCDSR CSEHGQCKNG TCVCSQGWNG 780
  781 RHCTLPGCEN GCSRHGQCTL ENGEYRCDCI EGWAGSDCSI ALELNCKDNI DNDGDGMTDC 840
  841 SDSECCSHPA CSEHIMCLSS NDPVEVLLRK QPPSVTASFY QRVKFLIEEN SVQSYAHMDE 900
  901 YSENRVSVMR GQVITPQGLG IVGIRVSVDR DSRFGFTLTR QGGWFDVLVN GGGAVTLQFQ 960
  961 RSPFRPLTRT VFVPWNRIVV LPPVQMQLSD DDETTSRNIK VAPLNPALTF LNSIHYHTAD1020
 1021 EANDASKVCM DHDHEKLRPQ LISTWMPNGV GAMPGKRVIF AETQIVQESI QIPGSDLHLT1080
 1081 YQSSQASGYL SIVRMRLTGE TIPPTLTHVH VGVEIEGALH VKTYEADPSL VHTFAWNKRN1140
 1141 VYRQKVYGVT VARISVGYQH STCQSPVWIA QTAKLQGYDV DISDIGGWGL DIHHHYNFHE1200
 1201 GILQKGDGST LHMKEYPRTV KVVMGTGLQR PLTCPDYCNG VAKDAKLLTP IALATGPDGS1260
 1261 LYVGDFNLVR RITPDGKVYT ILQLSATQVS YQYYLAVSPA DGHLYISDPE RHQILRLVRL1320
 1321 EKVKDPSINS DPVVGSGQRC IPGDEGNCGD GGPALLARLS HPKGLAIAAD RTMYIADGTN1380
 1381 IRAVDPKGVI HTLIGHHGHH NHWSPAPCSG TLMANQAQLQ WPTGLALSPL DGSLHFIDDR1440
 1441 LVLRLTSDMK IRVVAGTPLH CSNGGQDGRV NKTGADNVLG TVLAMAFSPF GNLYIADSDS1500
 1501 RRVNSIRVVD TAGNMRYFAG KQEGTGSQTC DCAIGGGSNG SATNSGVGGA SGSAYSTTVN1560
 1561 PTRPNGGTTP TTPSGGNGNG NGNGSSATSS GGSVGGSNGS GGGANGGACI CAGGIALSTG1620
 1621 TGSSSGSNGG GTLASIVGSG GLMSTGPTTT TTVLLGAKTT AAGIGAATLN DDGTLSNAET1680
 1681 LLSSNARFQA ISAIAVAQDG VINVADQGSL HVLALEHYLP SHDENGEFHI PFPPSSEIYV1740
 1741 FNRYGQHVAT KDLTSGKTRY SFLYSKNTSF GRLSTVTDAS GNKIQFLRDY SNVVSSIENT1800
 1801 QDHKSEIQIN GIGIMTKLSE KGRQEIELDY DSNTGLLNSR SSGGETYIYQ YDEFGRVTGM1860
 1861 ILPSGEIVRI TSQLADSQGL TVYVHASVES LFSRERIAGE ANELLVLGGV RSTFLKRGQA1920
 1921 HADAELKANN TLVIHGDNGV VVEASAVARH PLLEAALPVE AEMLAMWSHQ SVTMGEGLTN1980
 1981 SMYSVYSLVG DVRNPQQTLN REIWVNQSRV IGVEFDQFTN RETFYDARRT PILIVAYDQS2040
 2041 GLPKSYYPTN GYPVNITYDR FNRVEGWAWG PAELKYSYDR HGLLSEITSQ QDGIVSFVYN2100
 2101 DWNLVSEIGL ASQRKFVLQY DDAGGLRHVV LPSGTRHSFS MQTSIGFIRC TYTPPGSTRA2160
 2161 YLQHYSHAGA LLQTILPGDG ARIVYRYNAA GQLTEVVHGD GRSEFQYNEA TGMPSTVSHT2220
 2221 ERELEYRWDF EYAAGLLAEE RIDYVAKTGL SNAKFSYEYD SQLRVVALQG RIGGQSLPTQ2280
 2281 AFAYDPRTGR PSLIGQFRFS QPAQNQTQLH DGTASFTRTV DGRFQTQRMA LAIHRLEVFR2340
 2341 MEFSYGVHGR ISQTRTYTRN MAVNSYTNVK NYTWDCDGQL VGVEAQEPWG FRYDDNGNLL2400
 2401 SLTYRGNTIP MEYNAQDRIV KFGEGQYKYD ARGLVAQNAR EERFHYNTQG LLVRASKRGR2460
 2461 FDVRYYYDHL KRLTTRKDNF GNVTQFFYTN QQRPYEVSQI YSPRDGKLMS LTYDDVGHLI2520
 2521 YAQVYRHKYY VATDQSGTPL MLFNQYGEGI REIMRSPFGH IVYDSNPYLY LPIDFCGGIL2580
 2581 DQVTTLVHMG DGRVYDPLIG QWMSPDWQRV AERIITPTRL HLYRFNGNDP INVGHERHYP2640
 2641 EDFAAWMRTL GYNVGNLVPQ LARDLWQPPA LWGRPPANPV ALNLRRPFDN IPTMAVESGF2700
 2701 LAHLNVRRMS DFEQLSAPPR SALKCDVMDP SPKTIGSDTE PPFGKGIVVS RTADGQAIVS2760
 2761 SVPAANAIYR DVYTSVFNRS KLLPFTFVVH NAQQDSFFFV KEDAWRATED RQQLKRLQGQ2820
 2821 VNTTFHEITR EATVGSGPAG AANGGAGSSS SSSSSSGGGS SSNTGNYLDV KIHGAHAIIN2880
 2881 LRYGTTVAKE QQRLMHHAKL TAVRKAWHRE KEALRSGLTT ALEWSQQETD EILKQSYANN2940
 2941 YEGEYIHDVN LYPELAEDPY NIKFVKKKGA TGGAAGVPNS RRRRRRSTDL IQEEEEELHR3000
 3001 EADC

YRC Informatics Platform - Version 3.0
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