YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5730152
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNAQAGAQ SISDSLIAAA SAAADAGQSP TKLQEDSTGV LFESDVETTD GGLVKDITVM  60
   61 KKAEKRRLKL VWRNIIVFGY FHLAALYGAY LMVTSAKWQT CILAYFLYVI SGLGITAGAH 120
  121 RLWAHRSYKA KWPLRVILVI FNTIAFQDAA YHWARDHRVH HKYSETDADP HNATRGFFFS 180
  181 HVGWLLCKKH PEVKAKGKGV DLSDLRADPI LMFQKKYYMI LMPIACFIIP TVVPMYAWGE 240
  241 SFMNAWFVAT MFRWCFILNV TWLVNSAAHK FGGRPYDKFI NPSENISVAI LAFGEGWHNY 300
  301 HHVFPWDYKT AEFGKYSLNF TTAFIDFFAK IGWAYDLKTV STDIIKKRVK RTGDGTHATW 360
  361 GWGDVDQPKE EIEDAVITHK KSE

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	91	0.93
Non-Cytoplasmic	92	101	0.80
Transmembrane Helix	102	124	0.92
Cytoplasmic	125	216	0.88
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	244	0.82
Transmembrane Helix	245	265	0.89
Cytoplasmic	266	383	0.89