YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|103276, gi\|22...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APISFEANPD TKRLYDDLLS NYNRLIRPVV NNTETLTVWL GLKLSQLIEV NLKNQVMTTN  60
   61 LWVKQRWFDY KLRWDPEEYG GVEQLYVPSE HIWVPDIVLY NNWDGNYEVT LMTKATLKYT 120
  121 GEVFWEPPAI YKSSCEMNVE YFPYDEQICF MKFGSWTYNG AQVDLKHLDQ IPGSNLVQVG 180
  181 IDLTEFYLSV EWDILEVPAT KNEEYYPDTL EPFSDITFKL TMRRKTLFYT VNLIVPCVAL 240
  241 TFLTVLVFYL PSDSGEKVTL CISILVSLTV FFLLLAEIIP PTSLAVPLLG KYLLFTMILV 300
  301 SLSVWTTVCV LNIHFRSPST HNMSRLVRKL FLHFMPKLMM MRRTQYTLPD YDDSTPSNGY 360
  361 TNEIDVRDSI SDFPSEFKDS QDGAYDNGMQ NSVDSDNVIP RNLTPEVLQA LRAVRFIAQH 420
  421 IKDADKDNEI VEDWKFVSMV LDRFFLWLFT LSCVFGTLAI ICQSPSLYDT RSPIDRQLSE 480
  481 IPLRKNNFML PPDIVRQVLT

Type	Start	End	Confidence
Non-Cytoplasmic	1	227	0.76
Transmembrane Helix	228	250	0.94
Cytoplasmic	251	257	0.71
Transmembrane Helix	258	279	0.90
Non-Cytoplasmic	280	291	0.65
Transmembrane Helix	292	315	0.90
Cytoplasmic	316	443	0.79
Transmembrane Helix	444	463	0.91
Non-Cytoplasmic	464	500	0.79