YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|541207
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRMRFSPRS SFARTLLLIV TLLFVSLVTT YLVVLNFAIL PSLQQFNKVL AYEVRMLMTD  60
   61 KLQLEDGTQL VVPPAFRREI YRELGISXYT NEAAEEAGLR WAQHYEFLSH QMAQQLGGPT 120
  121 EVRVEVNKSS PVVWLKTWLS PNIWVRVPLT EIHQGDFSPL FRYTLAIMLL AIGGAWLFIR 180
  181 IQNRPLVDLE HAALQVGKGI IPPPLREYGA SEVRSVTRAF NHMAAGVKQL ADDRTLLMAG 240
  241 VSHDLRTPLT RIRLATEMMG EEDGYLAESI NKDIEECNAI IEQFIDYLRT GQEMPMEMAD 300
  301 LNSVLGEVIA AESGYEREIN TALQAGSIQV KMHPLSIKRA VANMVVNAAR YGNCWIKVSS 360
  361 GTESHRAWFQ VEDDGPGIKP EQRKHLFQPF VRGDSARSTS GTGLGLAIVQ RIIDNHNGML 420
  421 EIGTSERGGL SIRAWLPVPV ARVQGTTKEA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.67
Transmembrane Helix	16	35	0.73
Non-Cytoplasmic	36	159	0.96
Transmembrane Helix	160	179	0.62
Cytoplasmic	180	450	0.61