YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27694747
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQLTCLECAV NPASPPPSRS VVCSHFLSFP SPGISCIFLG QFTESSSADS MSVETASAPE  60
   61 YSAFFAVMGA SSAMVFSALG AAYGTAKSGT GIAAMSVMRP ELIMKSIIPV VMAGIIAIYG 120
  121 LVVAVLIANS LTQTITLYKS FLQLGAGLSV GLSGLAAGFA IGIVGDAGVR GTAQQPRLFV 180
  181 GMILILIFAE VLGLYGLIVA LILSTK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	62	0.85
Transmembrane Helix	63	86	0.91
Cytoplasmic	87	105	0.84
Transmembrane Helix	106	128	0.93
Non-Cytoplasmic	129	143	0.79
Transmembrane Helix	144	165	0.90
Cytoplasmic	166	177	0.75
Transmembrane Helix	178	202	0.90
Non-Cytoplasmic	203	206	0.76