YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14161715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.97
Transmembrane Helix	63	84	0.86
Non-Cytoplasmic	85	93	0.80
Transmembrane Helix	94	115	0.90
Cytoplasmic	116	135	0.85
Transmembrane Helix	136	157	0.88
Non-Cytoplasmic	158	231	0.96
Transmembrane Helix	232	253	0.91
Cytoplasmic	254	261	0.91
Transmembrane Helix	262	284	0.90
Non-Cytoplasmic	285	310	0.90
Transmembrane Helix	311	332	0.89
Cytoplasmic	333	343	0.86
Transmembrane Helix	344	366	0.88
Non-Cytoplasmic	367	394	0.90
Transmembrane Helix	395	417	0.82
Cytoplasmic	418	443	0.88
Transmembrane Helix	444	467	0.90
Non-Cytoplasmic	468	474	0.84
Transmembrane Helix	475	498	0.93
Cytoplasmic	499	518	0.96
Transmembrane Helix	519	540	0.94
Non-Cytoplasmic	541	555	0.92
Transmembrane Helix	556	578	0.90
Cytoplasmic	579	628	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLARMNPQV QPENNGADTG PEQPLRARKT AELLVVKERN GVQCLLAPRD GDAQPRETWG  60
   61 KKIDFLLSVV GFAVDLANVW RFPYLCYKNG GGAFLIPYTL FLIIAGMPLF YMELALGQYN 120
  121 REGAATVWKI CPFFKGVGYA VILIALYVGF YYNVIIAWSL YYLFSSFTLN LPWTDCGHTW 180
  181 NSPNCTDPKL LNGSVLGNHT KYSKYKFTPA AEFYERGVLH LHESSGIHDI GLPQWQLLLC 240
  241 LMVVVIVLYF SLWKGVKTSG KVVWITATLP YFVLFVLLVH GVTLPGASNG INAYLHIDFY 300
  301 RLKEATVWID AATQIFFSLG AGFGVLIAFA SYNKFDNNCY RDALLTSSIN CITSFVSGFA 360
  361 IFSILGYMAH EHKVNIEDVA TEGAGLVFIL YPEAISTLSG STFWAVVFFV MLLALGLDSS 420
  421 MGGMEAVITG LADDFQVLKR HRKLFTFGVT FSTFLLALFC ITKGGIYVLT LLDTFAAGTS 480
  481 ILFAVLMEAI GVSWFYGVDR FSNDIQQMMG FRPGLYWRLC WKFVSPAFLL FVVVVSIINF 540
  541 KPLTYDDYIF PPWANWVGWG IALSSMVLVP IYVIYKFLST QGSLWERLAY GITPENEHHL 600
  601 VAQRDIRQFQ MKTRQGRRRA TNSCQISC