YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21739535
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.61
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	258	0.83
Transmembrane Helix	259	278	0.60
Cytoplasmic	279	384	0.81
Transmembrane Helix	385	410	0.84
Non-Cytoplasmic	411	415	0.73
Transmembrane Helix	416	438	0.89
Cytoplasmic	439	446	0.69
Transmembrane Helix	447	468	0.92
Non-Cytoplasmic	469	475	0.78
Transmembrane Helix	476	497	0.91
Cytoplasmic	498	508	0.68
Transmembrane Helix	509	527	0.93
Non-Cytoplasmic	528	555	0.79
Transmembrane Helix	556	574	0.64
Cytoplasmic	575	603	0.70
Transmembrane Helix	604	625	0.93
Non-Cytoplasmic	626	638	0.69
Transmembrane Helix	639	659	0.93
Cytoplasmic	660	677	0.59
Transmembrane Helix	678	697	0.87
Non-Cytoplasmic	698	764	0.75
Transmembrane Helix	765	787	0.87
Cytoplasmic	788	793	0.70
Transmembrane Helix	794	816	0.88
Non-Cytoplasmic	817	822	0.67
Transmembrane Helix	823	844	0.66
Cytoplasmic	845	850	0.51
Transmembrane Helix	851	874	0.58
Non-Cytoplasmic	875	879	0.70
Transmembrane Helix	880	901	0.89
Cytoplasmic	902	948	0.82
Transmembrane Helix	949	971	0.87
Non-Cytoplasmic	972	984	0.73
Transmembrane Helix	985	1009	0.86
Cytoplasmic	1010	1026	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRFSRVVL VLIDALRFDF AQPQHSHVPR EPPVSLPFLG KLSSLQRILE IQPHHARLYR  60
   61 SQVDPPTTTM QRLKALTTGS LPTFIDAGSN FASHAIVEDN LIKQLTSAGR RVVFMGDDTW 120
  121 KDLFPGAFSK AFFFPSFNVR DLDTVDNGIL EHLYPTMDSG EWDVLIAHFL GVDHCGHKHG 180
  181 PHHPEMAKKL SQMDQVIQGL VERLENDTLL VVAGDHGMTT NGDHGGDSEL EVSAALFLYS 240
  241 PTAVFPSTPP EEPEVIPQVS LVPTLALLLG LPIPFGNIGE VMAELFSGGE DSQPHSSALA 300
  301 QASALHLNAQ QVSRFLHTYS AATQDLQAKE LHQLQNLFSK ASADYQWLLQ SPRAEATLPT 360
  361 VIAELQQFLR GARAMCIESW ARFSLVRMAG GTALLAASCF ICLLASQWAI SPGFPFCPLL 420
  421 LTPVAWGLVG AIAYAGLLGT IELKLDLVLL GAVAAVSSFL PFLWKAWAGW GSKRPLATLF 480
  481 PIPGPVLLLL LFRLAVFFSD SFVVAEARAT PFLLGSFILL LVVQLHWEGQ LLPPKLLTMP 540
  541 RLGTSATTNP PRHNGAYALR LGIGLLLCTR LAGLFHRCPE ETPVCHSSPW LSPLASMVGG 600
  601 RAKNLWYGAC VAALVALLAA VRLWLRRYGN LKSPEPPMLF VRWGLPLMAL GTAAYWALAS 660
  661 GADEAPPRLR VLVSGASMVL PRAVAGLAAS GLALLLWKPV TVLVKAGAGA PRTRTVLTPF 720
  721 SGPPTSQADL DYVVPQIYRH MQEEFRGRLE RTKSQGPLTV AAYQLGSVYS AAMVTALTLL 780
  781 AFPLLLLHAE RISLVFLLLF LQSFLLLHLL AAGIPVTTPG PFTVPWQAVS AWALMATQTF 840
  841 YSTGHQPVFP AIHWHAAFVG FPEGHGSCTW LPALLVGANT FASHLLFAVG CPLLLLWPFL 900
  901 CESQGLRKRQ QPPGNEADAR VRPEEEEEPL MEMRLRDAPQ HFYAALLQLG LKYLFILGIQ 960
  961 ILACALAASI LRRHLMVWKV FAPKFIFEAV GFIVSSVGLL LGIALVMRVD GAVSSWFRQL1020
 1021 FLAQQR