YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1518259
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLHEADSLSR AATVLATVLL LSFGSVAASH IEDQAEQFFR SGHTNNWAVL VCTSRFWFNY  60
   61 RHVANTLSVY RSVKRLGIPD SHIVLMLADD MACNPRNPKP ATVFSHKNME LNVYGDDVEV 120
  121 DYRSYEVTVE NFLRVLTGRI PPSTPRSKRL LSDDRSNILI YMTGHGGNGF LKFQDSEEIT 180
  181 NIELADAFEQ MWQKRRYNEL LFIIDTCQGA SMYERFYSPN IMALASSQVG EDSLSHQPDP 240
  241 AIGVHLMDRY TFYVLEFLEE INPASQTNMN DLFQVCPKSL CVSTPGHRTD LFQRDPKNVL 300
  301 ITDFFGSVRK VEITTETIKL QQDSEIMESS YKEDQMDEKL MEPLKYAEQL PVAQIIHQKP 360
  361 KLKDWHPPGG FILGLWALII MVFFKTYGIK HMKFIF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.79
Transmembrane Helix	11	31	0.83
Non-Cytoplasmic	32	364	0.94
Transmembrane Helix	365	389	0.83
Cytoplasmic	390	396	0.91