YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148234538, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPNRR QALSRIITQL NTPLCIFSYL VGVVWFLGLA FHPFTLRSYI SENSMGSTMV  60
   61 EEQFVSGERA VSYAREFAAH KKSAGGSPVA WLERTMSGLG LEVYSQSFVR TLPFPDETTE 120
  121 RFMVKGTNVY GILRAPRAAS TESLVLSVPC SEGQNNNQAV GLLLALASYF RGQIYWAKDI 180
  181 IFLVNEHDLI GMEAWLEGYH DVNVTEIKSS VMIGRAGAIQ AAVSLEMSSD VVTSFDLVVE 240
  241 GLNGQLPNLD LVSLFYAFCQ KNALLCTIQG KLQRNDFDTF PGYLHSLQTM LIMVLKQGAG 300
  301 RPQGDHGLFL RYHIEAITLR GINSFRQYKY DLSTVGKTLE GMFRKLNNLS ERLHQSYFFY 360
  361 LLPCLSRFVS IGIYMPAVGF IILILILRSL DLWIKLRHSD GRTEDGVMDT EQDPRPGILS 420
  421 LATPIVICHA TGLSLYYLPV MSQEMATDHF PVSESEAVVL TAIAIYVAGL ALPHNTHRVL 480
  481 TGAGSEQGWM TLKLISLLYL AVLLGCISLI NFSLGFLLAI TIVPVAAIVQ PTGPRALYAI 540
  541 LLVLITPATT LLGSIFLYRE LIEYPVSVLE GWQLFLQAIA GGMLDHYLYG SLLFPFIAFF 600
  601 VYPCWLQLWN VVFWK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	42	0.91
Non-Cytoplasmic	43	367	0.98
Transmembrane Helix	368	387	0.92
Cytoplasmic	388	417	0.89
Transmembrane Helix	418	438	0.90
Non-Cytoplasmic	439	456	0.84
Transmembrane Helix	457	476	0.89
Cytoplasmic	477	494	0.86
Transmembrane Helix	495	523	0.87
Non-Cytoplasmic	524	535	0.71
Transmembrane Helix	536	558	0.92
Cytoplasmic	559	567	0.72
Transmembrane Helix	568	584	0.63
Non-Cytoplasmic	585	586	0.40
Transmembrane Helix	587	613	0.76
Cytoplasmic	614	615	0.64