YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32822845
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.96
Transmembrane Helix	78	99	0.87
Non-Cytoplasmic	100	124	0.80
Transmembrane Helix	125	149	0.75
Cytoplasmic	150	161	0.73
Transmembrane Helix	162	183	0.79
Non-Cytoplasmic	184	202	0.74
Transmembrane Helix	203	223	0.84
Cytoplasmic	224	342	0.79
Transmembrane Helix	343	365	0.94
Non-Cytoplasmic	366	393	0.67
Transmembrane Helix	394	427	0.74
Cytoplasmic	428	435	0.68
Transmembrane Helix	436	457	0.83
Non-Cytoplasmic	458	465	0.78
Transmembrane Helix	466	486	0.91
Cytoplasmic	487	505	0.87
Transmembrane Helix	506	525	0.93
Non-Cytoplasmic	526	682	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLAETHPA SPPPELGADA DKHEPQTPTR TLSPWPAQQW EPEQEEEVDP WELPELLDTG  60
   61 VKWSELDRRG KVLRVCTSVL KLLLLLGLLY MFVCSLDILS SAFQLVGGKA AGDIFKDNAV 120
  121 LSNPVAGLVI GVLVTVLVQS SSTSSSIVVS MVSSGLLEAK SAVPIIMGAN IGTSVTNTIV 180
  181 AVMQAGDRNE FRRAFAGATV HDFFNWLSVL VLLPLEVASG MLYRLTKLVI DSFNIQTGAD 240
  241 APDLLKVITE PLTKNIIELD TSVIRDIATG DPAARNKSLI KIWCKTEKIT NLVNVTVPGI 300
  301 ANCTPDALCW VDGDLIWTQK NQTDTIYLKK CTHMFVFADL PDLAVGLILL ALSLLALCTC 360
  361 LILIVKLLNS MLKGQVAVVI KKVLNTDFPF PFAWVTGYLA ILVGAGMTFI VQSSSVFTSA 420
  421 ITPLVGIGVI SLERAYPLTL GSNIGTTTTA ILAAMASPGE TLANSLQISL CHFFFNIAGI 480
  481 LLWYPIPFTR VPIRLAKALG NRTAKYRWFA GLYLILCHLL FNTILERRHR FNTSLERHLL 540
  541 FNTSLEHHLL FNTSLERRHR FNTSLERRLP FNTSLERRLP FNTSLERHLP FNTGLERRHR 600
  601 FNTGLERRHR FNTGLERRLP FNTGLERRLP FNTGLERRLP FNTSLERRLP FNTAGDSGEN 660
  661 SFLLLLLLLL KSHYLVQSRF HE