YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218770448, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	24	0.93
Non-Cytoplasmic	25	41	0.85
Transmembrane Helix	42	63	0.89
Cytoplasmic	64	76	0.79
Transmembrane Helix	77	96	0.93
Non-Cytoplasmic	97	114	0.82
Transmembrane Helix	115	138	0.80
Cytoplasmic	139	149	0.78
Transmembrane Helix	150	170	0.77
Non-Cytoplasmic	171	238	0.78
Transmembrane Helix	239	261	0.73
Cytoplasmic	262	310	0.72
Transmembrane Helix	311	334	0.82
Non-Cytoplasmic	335	355	0.59
Transmembrane Helix	356	378	0.82
Cytoplasmic	379	403	0.52
Transmembrane Helix	404	424	0.90
Non-Cytoplasmic	425	488	0.52
Transmembrane Helix	489	509	0.82
Cytoplasmic	510	520	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF LFLPVFLGLY YLSGERYRNL LLLIASYVFY AWWRVDFLLL FAGVTVFNYW  60
   61 IGLRIGAAGV RTRAAQRWLI LGVVVDLCVL GYFKYANFGV DSLNEIITSF GMQPFVLTHI 120
  121 LLPIGISFYT FESISYIIDV YRGDTPATHN LIDFAAFVAI FPHLIAGPVL RFKDLVDQFN 180
  181 HRTHTVDKFA EGCTRFMQGF VKKVFIADTL AALADHCFAL QNPTTGDAWL GALAYTAQLY 240
  241 FDFSGYSDMA IGLGLMMGFR FMENFNQPYI SQSITEFWRR WHISLSTWLR DYLYISLGGN 300
  301 RGSTFQTYRN LFLTMLLGGL WHGANFTYII WGAWHGMWLA IERALGVNAA PRVLNPLKWA 360
  361 FTFLLVVIGW VIFRAENLQV AWRMYEAMFS FGTWQLSELN RASLTGLQVG TLVLAYLVLA 420
  421 FFGLRQFYNQ PLQTKAPKAA ANSDEVAADG PASAQPRAPR EAAGDPAAIA YSPSGALVYQ 480
  481 PSWLSQLPVL ATRLALLLLF AASVLKLSAQ SYSPFLYFQF