YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147907034, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.91
Transmembrane Helix	43	64	0.79
Non-Cytoplasmic	65	73	0.81
Transmembrane Helix	74	96	0.86
Cytoplasmic	97	117	0.87
Transmembrane Helix	118	143	0.84
Non-Cytoplasmic	144	206	0.96
Transmembrane Helix	207	227	0.93
Cytoplasmic	228	235	0.89
Transmembrane Helix	236	258	0.82
Non-Cytoplasmic	259	288	0.81
Transmembrane Helix	289	307	0.95
Cytoplasmic	308	317	0.85
Transmembrane Helix	318	341	0.90
Non-Cytoplasmic	342	373	0.88
Transmembrane Helix	374	391	0.84
Cytoplasmic	392	420	0.81
Transmembrane Helix	421	443	0.90
Non-Cytoplasmic	444	451	0.84
Transmembrane Helix	452	476	0.91
Cytoplasmic	477	494	0.95
Transmembrane Helix	495	516	0.92
Non-Cytoplasmic	517	534	0.91
Transmembrane Helix	535	554	0.95
Cytoplasmic	555	600	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNKVPGAIS NGDCVPTKPL MEKEPKAEDS AGMTERGQWN NKVEFVLSVA GEIIGLGNVW  60
   61 RFPYLCYKNG GGAFFIPYLI FLFTCGIPVF FLETALGQYT SQGGVTAWRK ICPLFEGIGY 120
  121 ASQVIVMLLN CYYVIVLAWA LFYLFNSFTS ELPWASCGHS WNTENCVDFY KANSTHNVTL 180
  181 NGTSSVIEFW ERRVLGISDG IGNIGSLRWE LALCLLLAWI ICYFCIWKGV KSTGKVVYFT 240
  241 ATFPYLMLIV LLIRGVSLPG ALTGIQFYLY PDLSKLQDPE VWMDAGTQIF FSYAICLGCL 300
  301 TALGSYNKYN NNCYRDCIAL CFLNSGTSFV AGFAIFSILG FMAEEQGVHI SEVAESGPGL 360
  361 AFIAYPRAVS MMPFSPLWAC FFFFMVILLG LDSQFVCVES LVTAVVDMYP TIFRKKNRRE 420
  421 LLILAVSIVS FFVGLIMLTE GGMYVFQLFD YYAASGMCLL FVAIFETLCV GWVYGADNFY 480
  481 ENVEHMIGYR PTAIIKYCWL FITPAVCMAT FLFSLVKYTP LNYNKRYVYP WWGDAIGWLL 540
  541 ALSSMVCIPL WVGYKLSTIK GSLIERFRQL TCPDPDLPQK TQCEPLSQVA QGTLLEESLC 600
  601