YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28436918
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTRGVLYTRF IMMRAVLLFG CALLVVARPD ISEEKDVLVL KKDNFDEALK QYPYILVEFY  60
   61 APWCGHCKAL APEYEKAAGI LKSEGLPIRL GKVDATEESD LAQEFGVRGY PTIKFFKNGD 120
  121 KSSPKEYSAG REAADFVNWL KKRTGPAAST LSDEAAVAAL VASSEVAVIG FFKDLESELA 180
  181 KVFLQAAEAV DDVPFGITSS EAAFSKHELG KDGIVLFKKF DEGRNAFEGE ITKEEVLSFI 240
  241 KANRLPLVIE FTEQTAPMIF GGEIKTHILF FLPKSASDYQ DKLENFKKAA ASFKGKILFI 300
  301 FIDSDHTDNQ RILEFFGLKK EECPAVRLIT LEEEMTKYKP ESSDLSAEAI KEFCDRFLEG 360
  361 KVKPHLMSQD VPEDWDKTPV KILVGKNFEE VVFDEEKNVF VEFYAPWCGH CKQLAPIWDQ 420
  421 LGEKYKDHES IIIAKMDSTA NEIEAVKIHS FPTLKFFPAG PGKKVVDYNG ERTQEGFSKF 480
  481 LESGGQDGAA DEDLEDLEEA DETDLEEGDD IHTKDEL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	27	0.90
Non-Cytoplasmic	28	517	0.99