YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27735443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGSTRSVGLI YCFHLAPSRA VSPDPPRCQP GNLPSCSGSM SGKHYKGPEV SCCIKYFIFG  60
   61 FNVIFWLLGL TFLGVGLWAW SEKGVLSNIS SITDLGGFDP VWLFLVVGGV MFILGFAGCI 120
  121 GALRENTFLL KFFSVFLGII FFLELTAGVL AFVFKDWIKD QLQFFINNNI RAYRDDIDLQ 180
  181 NLIDFTQEYW QCCGAFGADD WNLNIYFNCT DSNASRERCG VPFSCCTKDP AEDVINTQCG 240
  241 YDVRQKPELD QQETIHTKGC VPQFEKWLQD NLTIVAGVFI GIALLQIFGI CLAQNLVSDI 300
  301 EAVRASW

Type	Start	End	Confidence
Cytoplasmic	1	55	0.97
Transmembrane Helix	56	80	0.86
Non-Cytoplasmic	81	100	0.93
Transmembrane Helix	101	123	0.93
Cytoplasmic	124	131	0.83
Transmembrane Helix	132	154	0.92
Non-Cytoplasmic	155	272	0.97
Transmembrane Helix	273	297	0.82
Cytoplasmic	298	307	0.90