YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28436780
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.69
Transmembrane Helix	19	42	0.77
Cytoplasmic	43	55	0.67
Transmembrane Helix	56	77	0.93
Non-Cytoplasmic	78	112	0.82
Transmembrane Helix	113	133	0.92
Cytoplasmic	134	148	0.87
Transmembrane Helix	149	167	0.98
Non-Cytoplasmic	168	174	0.81
Transmembrane Helix	175	198	0.90
Cytoplasmic	199	216	0.94
Transmembrane Helix	217	242	0.89
Non-Cytoplasmic	243	254	0.86
Transmembrane Helix	255	274	0.93
Cytoplasmic	275	283	0.84
Transmembrane Helix	284	303	0.71
Non-Cytoplasmic	304	334	0.77
Transmembrane Helix	335	356	0.86
Cytoplasmic	357	407	0.79
Transmembrane Helix	408	429	0.87
Non-Cytoplasmic	430	449	0.71
Transmembrane Helix	450	470	0.91
Cytoplasmic	471	476	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKEKASIFIR PHQESNMGGV LGLCTAASWI PCLCGSAPCL LCRCCPSGNN STVTRLIYAF  60
   61 FLLIGVAVAC VMLIPGMEEQ LKKIPGFCDD GMGSSIPGIS GHVNCDVLVG YKAVYRVCFG 120
  121 MAMFFLLFSL LMIKVKSSQD PRASLHNGFW FFKFAAAVGI TVGAFFIPEG PFTTVWFYVG 180
  181 MGGAFCFILI QLVLLIDFAH SWNESWVEKM EEGNSRCWYV ALLSATGLNY VLSLVAIVLL 240
  241 YVYYTHPEGC AENKAFISVN MLLCIGVSIM SVLPKIQESQ PRSGLLQSSV ITVYTMYLTW 300
  301 SAMTNEPDRK CNPSLLSIIG YNSTSTPGQV KVVQWWDAQG IVGLVLFLLC VLYSSIRTSN 360
  361 NSQVNKLTLT SDESTLIEDG GRSEGSMDDS DNAHRAVDNE RDGVTYSYSF FHFMLFLASL 420
  421 YIMMTLTNWY SPDSSYEMMT SKWPSVWVKI SSSWVCIVLY VWTLVAPLVL TNREFD