YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27924179
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CAVWGGDRGS AWQVVAITHK THPYHSCHCG FAKQIQTAVT MAFKELTSRA VLLYDEWIKD  60
   61 ADPRVEDWPL MSSPILQTII IGAYIYFVTS LGPRIMENRK PFALKEIMAC YNLFMVLFSV 120
  121 YMCYEFLMSG WATGYSFRCD IVDYSQSPQA LRMAWTCWLF YFSKFIELLD TVFFVLRKKN 180
  181 SQITFLHVYH HSIMPWTWWF GVKFAPGGLG TFHALVNCVV HVIMYSYYGL SALGPAYQKY 240
  241 LWWKKYMTSI QLTQFLMVTF HIGQFFFMEN CPYQYPVFLY VIWLYGFVFL ILFLNFWFHA 300
  301 YIKGQRLPKA VQNGHCKNNN NQENTWCKNK NQKNGALKSK NH

Type	Start	End	Confidence
Non-Cytoplasmic	1	73	0.81
Transmembrane Helix	74	92	0.78
Cytoplasmic	93	107	0.81
Transmembrane Helix	108	128	0.90
Non-Cytoplasmic	129	153	0.87
Transmembrane Helix	154	176	0.70
Cytoplasmic	177	182	0.77
Transmembrane Helix	183	202	0.68
Non-Cytoplasmic	203	208	0.65
Transmembrane Helix	209	230	0.85
Cytoplasmic	231	246	0.74
Transmembrane Helix	247	268	0.85
Non-Cytoplasmic	269	278	0.83
Transmembrane Helix	279	299	0.94
Cytoplasmic	300	342	0.97