YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2996578
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.43
Transmembrane Helix	8	35	0.60
Cytoplasmic	36	148	0.57
Transmembrane Helix	149	169	0.88
Non-Cytoplasmic	170	205	0.73
Transmembrane Helix	206	225	0.77
Cytoplasmic	226	240	0.86
Transmembrane Helix	241	265	0.87
Non-Cytoplasmic	266	337	0.84
Transmembrane Helix	338	360	0.90
Cytoplasmic	361	366	0.80
Transmembrane Helix	367	387	0.81
Non-Cytoplasmic	388	432	0.53
Transmembrane Helix	433	455	0.79
Cytoplasmic	456	466	0.64
Transmembrane Helix	467	486	0.76
Non-Cytoplasmic	487	494	0.64
Transmembrane Helix	495	514	0.93
Cytoplasmic	515	532	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ACGAAAMAAL TIATGTGNWF SALALGVTLL KCLLIPTYHS TDFEVHRNWL AITHSLPISQ  60
   61 WYYEATSEWT LDYPPFFAWF EYILSHVAKY FDQEMLNVHN LNYSSSRTLL FQRFSVIFMD 120
  121 VLFVYAVREC CKCIDGKKVG KELTEKPKFI LSVLLLWNFG LLIVDHIHFQ YNGFLFGLML 180
  181 LSIARLFQKR HMEGAFLFAV LLHFKHIYLY VAPAYGVYLL RSYCFTASKP DGSIRWKSFS 240
  241 FVRVISLGLV VFLVSALSLG PFLALNQLPQ VFSRLFPFKR GLCHAYWAPN FWALYNALDK 300
  301 VLSVIGLKLK FLDPNNIPKA SMTSGLVQQF QHTVLPSVTP LATLICTLIA ILPSIFCLWF 360
  361 KPQGPRGFLR CLTLCALSSF MFGWHVHEKA ILLAILPMSL LSVGKAGDAS IFLILTTTGH 420
  421 YSLFPLLFTA PELPIKILLM LLFTIYSISS LKTLFRKEKP LFNWMETFYL LGLGPLEVCC 480
  481 EFVYPFTSWK VKYPFIPLLL TSVYCAVGIT YAWFKLYVSV LIDSAIGKTK KQ