YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|509068
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.97
Transmembrane Helix	125	147	0.88
Non-Cytoplasmic	148	163	0.93
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	194	0.83
Transmembrane Helix	195	215	0.87
Non-Cytoplasmic	216	265	0.89
Transmembrane Helix	266	286	0.92
Cytoplasmic	287	345	0.93
Transmembrane Helix	346	366	0.86
Non-Cytoplasmic	367	381	0.88
Transmembrane Helix	382	404	0.93
Cytoplasmic	405	523	0.98
Transmembrane Helix	524	543	0.94
Non-Cytoplasmic	544	585	0.77
Transmembrane Helix	586	606	0.53
Cytoplasmic	607	650	0.76
Transmembrane Helix	651	673	0.87
Non-Cytoplasmic	674	723	0.85
Transmembrane Helix	724	745	0.86
Cytoplasmic	746	899	0.97
Transmembrane Helix	900	919	0.91
Non-Cytoplasmic	920	937	0.87
Transmembrane Helix	938	959	0.59
Cytoplasmic	960	968	0.55
Transmembrane Helix	969	991	0.79
Non-Cytoplasmic	992	1022	0.58
Transmembrane Helix	1023	1051	0.67
Cytoplasmic	1052	1141	0.54
Transmembrane Helix	1142	1167	0.85
Non-Cytoplasmic	1168	1219	0.65
Transmembrane Helix	1220	1242	0.84
Cytoplasmic	1243	1248	0.58
Transmembrane Helix	1249	1273	0.80
Non-Cytoplasmic	1274	1347	0.58
Transmembrane Helix	1348	1367	0.93
Cytoplasmic	1368	1441	0.71
Transmembrane Helix	1442	1465	0.88
Non-Cytoplasmic	1466	2127	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNENTRMYI PEENHQGSNY GSPRPAHANM NANAAAGLAP EHIPTPGAAL SWQAAIDAAR  60
   61 QAKLMGSAGN ATISTVSSTQ RKRQQYGKPK KQGSTTATRP PRALLCLTLK NPIRRACISI 120
  121 VEWKPFEIII LLTIFANCVA LAIYIPFPED DSNATNSNLE RVEYLFLIIF TVEAFLKVIA 180
  181 YGLLFHPNAY LRNGWNLLDF IIVVVGLFSA ILEQATKADG ANALGGKGAG FDVKALRAFR 240
  241 VLRPLRLVSG VPSLQVVLNS IIKAMVPLLH IALLVLFVII IYAIIGLELF MGKMHKTCYN 300
  301 QEGIADVPAE DDPSPCALET GHGRQCQNGT VCKPGWDGPK HGITNFDNFA FAMLTVFQCI 360
  361 TMEGWTDVLY WVNDAVGRDW PWIYFVTLII IGSFFVLNLV LGVLSGEFSK EREKAKARGD 420
  421 FQKLREKQQL EEDLKGYLDW ITQAEDIDPE NEDEGMDEEK PRNMSMPTSE TESVNTENVA 480
  481 GGDIEGENCG ARLAHRISKS KFSRYWRRWN RFCRRKCRAA VKSNVFYWLV IFLVFLNTLT 540
  541 IASEHYNQPN WLTEVQDTAN KALLALFTAE MLLKMYSLGL QAYFVSLFNR FDCFVVCGGI 600
  601 LETILVETKI MSPLGISVLR CVRLLRIFKI TRYWNSLSNL VASLLNSVRS IASLLLLLFL 660
  661 FIIIFSLLGM QLFGGKFNFD EMQTRRSTFD NFPQSLLTVF QILTGEDWNS VMYDGIMAYG 720
  721 GPSFPGMLVC IYFIILFICG NYILLNVFLA IAVDNLADAE SLTSAQKEEE EEKERKKLAR 780
  781 TASPEKKQEL VEKPAVGESK EEKIELKSIT ADGESPPATK INMDDLQPNE NEDKSPYPNP 840
  841 ETTGEEDEEE PEMPVGPRPR PLSELHLKEK AVPMPEASAF FIFSSNNRFR LQCHRIVNDT 900
  901 IFTNLILFFI LLSSISLAAE DPVQHTSFRN HILGNADYVF TSIFTLEIIL KMTAYGAFLH 960
  961 KGSFCRNYFN ILDLLVVSVS LISFGIQSSA INVVKILRVL RVLRPLRAIN RAKGLKHVVQ1020
 1021 CVFVAIRTIG NIVIVTTLLQ FMFACIGVQL FKGKLYTCSD SSKQTEAECK GNYITYKDGE1080
 1081 VDHPIIQPRS WENSKFDFDN VLAAMMALFT VSTFEGWPEL LYRSIDSHTE DKGPIYNYRV1140
 1141 EISIFFIIYI IIIAFFMMNI FVGFVIVTFQ EQGEQEYKNC ELDKNQRQCV EYALKARPLR1200
 1201 RYIPKNQHQY KVWYVVNSTY FEYLMFVLIL LNTICLAMQH YGQSCLFKIA MNILNMLFTG1260
 1261 LFTVEMILKL IAFKPKHYFC DAWNTFDALI VVGSIVDIAI TEVNNAEENS RISITFFRLF1320
 1321 RVMRLVKLLS RGEGIRTLLW TFIKSFQALP YVALLIVMLF FIYAVIGMQV FGKIALNDTT1380
 1381 EINRNNNFQT FPQAVLLLFR CATGEAWQDI MLACMPGKKC APESEPSNST EGETPCGSSF1440
 1441 AVFYFISFYM LCAFLIINLF VAVIMDNFDY LTRDWSILGP HHLDEFKRIW AEYDPEAKGR1500
 1501 IKHLDVVTLL RRIQPPLGFG KLCPHRVACK RLVSMNMPLN SDGTVMFNAT LFALVRTALR1560
 1561 IKTEGNLEQA NEELRAIIKK IWKRTSMKLL DQVVPPAGDD EVTVGKFYAT FLIQEYFRKF1620
 1621 KKRKEQGLVG KPSQRNALSL QAGLRTLHDI GPEIRRAISG DLTAEEELDK AMKEAVSAAS1680
 1681 EDDIFRRAGG LFGNHVSYYQ SDGRSAFPQT FTTQRPLHIN KAGSSQGDTE SPSHEKLVDS1740
 1741 TFTPSSYSST GSNANINNAN NTALGRLPRP AGYPSTVSTV EGHGPPLSPA IRVQEVAWKL1800
 1801 SSNRCHSRES QAAMAGQEET SQDETYEVKM NHDTEACSEP SLLSTEMLSY QDDENRQLTL1860
 1861 PEEDKRDIRQ SPKRGFLRSA SLGRRASFHL ECLKRQKDRG GDISQKTVLP LHLVHHQALA1920
 1921 VAGLSPLLQR SHSPASFPRP FATPPATPGS RGWPPQPVPT LRLEGVESSE KLNSSFPSIH1980
 1981 CGSWAETTPG GGGSSAARRV RPVSLMVPSQ AGAPGRQFHG SASSLVEAVL ISEGLGQFAQ2040
 2041 DPKFIEVTTQ ELADACDMTI EEMESAADNI LSGGAPQSPN GALLPFVNCR DAGQDRAGGE2100
 2101 EDAGCVRARG APSEEELQDS RVYVSSL