YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55670856, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSHHHHHHS SGRENLYFQG HMARPGMERW RDRLALVTGA SGGIGAAVAR ALVQQGLKVV  60
   61 GCARTVGNIE ELAAECKSAG YPGTLIPYRC DLSNEEDILS MFSAIRSQHS GVDICINNAG 120
  121 LARPDTLLSG STSGWKDMFN VNVLALSICT REAYQSMKER NVDDGHIINI NSMSGHRVLP 180
  181 LSVTHFYSAT KYAVTALTEG LRQELREAQT HIRATCISPG VVETQFAFKL HDKDPEKAAA 240
  241 TYEQMKCLKP EDVAEAVIYV LSTPAHIQIG DIQMRPTGS

Type	Start	End	Confidence
Cytoplasmic	1	33	0.56
Transmembrane Helix	34	49	0.59
Non-Cytoplasmic	50	279	0.97