YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13487717
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.90
Transmembrane Helix	95	114	0.61
Non-Cytoplasmic	115	139	0.68
Transmembrane Helix	140	161	0.78
Cytoplasmic	162	173	0.73
Transmembrane Helix	174	195	0.84
Non-Cytoplasmic	196	202	0.52
Transmembrane Helix	203	225	0.81
Cytoplasmic	226	254	0.62
Transmembrane Helix	255	276	0.85
Non-Cytoplasmic	277	282	0.53
Transmembrane Helix	283	307	0.87
Cytoplasmic	308	339	0.57
Transmembrane Helix	340	363	0.81
Non-Cytoplasmic	364	375	0.53
Transmembrane Helix	376	398	0.82
Cytoplasmic	399	405	0.49
Transmembrane Helix	406	430	0.80
Non-Cytoplasmic	431	438	0.45
Transmembrane Helix	439	462	0.83
Cytoplasmic	463	468	0.55
Transmembrane Helix	469	497	0.82
Non-Cytoplasmic	498	656	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSNADAEE KKEMDIRSFS SSQHNQTPYI HKVGVPPKQG VFKEFKTTVK ETFFADDPLR  60
   61 SFKDQPRSRK LVLGLQAIFP ILDWGRSYNL RKFRGDLISG LTIASLCIPQ DIGYSKLANL 120
  121 DPQYGLYSSF VPPLVYAFMG SSRDIAIGPV AVVSLLLGTL LRNEIDPSKH PAEYLRLAFT 180
  181 ATFFAGITQA TLGILRLGFL IDFLSHAAVV GFMGGAAITI ALQQLKGFLG IKKFTKKADI 240
  241 ISVMKSVFHS VEHEWNWQTI LIGATFLTFL LFAKYVGKKN KKLFWVPAIA PLISVILSTF 300
  301 FVYITHADKR GVAIVGRIEK GINPPSVDKI YFSGDYLMKG IRTGIVAGMI ALTEAVAIGR 360
  361 TFASMKDYQL DGNKEMVALG AMNIVGSMTS CYVATSSFSR SAVNYMAGCQ TAFSNIVMSV 420
  421 VVFLTLEFIT PLFKFTPNAI LAAIIISAVL GLIDYEAAIL IWKIDKFDFV ACIGAFFGVV 480
  481 FASVEIGLLI AVTISFAKIL LQVTRPRTAT LGRIPRTNVY RNTQQYPEAT KVPGVLIVRV 540
  541 DSAIYFSNSN YIKERILRWL MDEEEQRKAT SDPKIQFLIV EMSPVTDIDT SGIHALEELH 600
  601 RSLIKRNVQL VLSNPGRVVI DKLHASKFPD QIGEDKIFLT VADAVLTCSL KLPEEV